myRT

myRT report for GCA_000161415.1_ASM16141v1

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Seq: CM000743.1 Bacillus pseudomycoides strain Rock1-4 chromosome, whole genome shotgun sequence (5841497 bp)
Overview 1 RT 1: 4538718-4545875 bp 2 RT 2: 4829292-4835049 bp 3 RT 3: 4983769-4988035 bp 4 RT 4: 5744459-5751013 bp Neighborhood of RT #1 [4538718, 4546084] DUF1877 MFS_MefA_like RVT-GII GIIM DUF4352 DUF5105 DUF3994 Neighborhood of RT #2 [4829292, 4835279] O-antigen_lig LZ_Tnp_IS66 zf-IS66 RVT-GII HipB Neighborhood of RT #3 [4983769, 4988035] Rve PRK03103 RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC Neighborhood of RT #4 [5744459, 5751013] Acyl_transf_3 RVT-GII GIIM HNHc Feature: gene Location: 4538718-4539179 bp Feature: domain Description: DUF1877 Location: 4538721-4539171 bp Feature: domain Description: DUF1 877 Location: 4538721 -45391 71 bp Feature: gene Location: 4539908-4541281 bp Feature: domain Description: MFS_MefA_like Location: 4540070-4541210 bp Feature: domain Description: MFS_MefA_like Location: 4540070-4541 21 0 bp Feature: gene Location: 4542453-4543163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542657-4542816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542657-454281 6 bp Feature: domain Description: GIIM Note: maturase Location: 4543068-4543161 bp Feature: domain Description: GIIM Note: maturase Location: 4543068-45431 61 bp Feature: gene Location: 4543834-4544889 bp Feature: domain Description: DUF4352 Location: 4543948-4544269 bp Feature: domain Description: DUF4352 Location: 4543948-4544269 bp Feature: domain Description: DUF5105 Location: 4544335-4544884 bp Feature: domain Description: DUF51 05 Location: 4544335-4544884 bp Feature: gene Location: 4545122-4546084 bp Feature: domain Description: DUF3994 Location: 4545566-4545875 bp Feature: domain Description: DUF3994 Location: 4545566-4545875 bp Feature: gene Location: 4829292-4830686 bp Feature: domain Description: O-antigen_lig Location: 4829319-4830681 bp Feature: domain Description: O-antigen_lig Location: 482931 9-4830681 bp Feature: gene Location: 4831562-4832149 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4831652-4831865 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4831 652-4831 865 bp Feature: domain Description: zf-IS66 Location: 4831889-4832021 bp Feature: domain Description: zf-IS66 Location: 4831 889-4832021 bp Feature: gene Location: 4832262-4832786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832394-4832736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832394-4832736 bp Feature: gene Location: 4833205-4833384 bp Feature: gene Location: 4834779-4835279 bp Feature: domain Description: HipB Location: 4834791-4835049 bp Feature: domain Description: HipB Location: 4834791 -4835049 bp Feature: gene Location: 4983769-4984374 bp Feature: domain Description: Rve Location: 4983775-4984303 bp Feature: domain Description: Rve Location: 4983775-4984303 bp Feature: gene Location: 4984507-4984659 bp Feature: domain Description: PRK03103 Location: 4984510-4984648 bp Feature: domain Description: PRK031 03 Location: 498451 0-4984648 bp Feature: gene Location: 4985031-4986842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4985295-4986126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4985295-49861 26 bp Feature: domain Description: Intron_maturas2 Location: 4986207-4986540 bp Feature: domain Description: Intron_maturas2 Location: 4986207-4986540 bp Feature: domain Description: HNHc Note: nucleases Location: 4986636-4986813 bp Feature: domain Description: HNHc Note: nucleases Location: 4986636-498681 3 bp Feature: gene Location: 4987509-4987622 bp Feature: domain Description: PolY_Pol_V_umuC Location: 4987512-4987617 bp Feature: domain Description: PolY_Pol_V_umuC Location: 498751 2-498761 7 bp Feature: gene Location: 4987775-4988035 bp Feature: gene Location: 5744459-5745544 bp Feature: gene Location: 5746008-5747177 bp Feature: domain Description: Acyl_transf_3 Location: 5746059-5747061 bp Feature: domain Description: Acyl_transf_3 Location: 5746059-5747061 bp Feature: gene Location: 5748250-5750112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5748544-5749249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5748544-5749249 bp Feature: domain Description: GIIM Note: maturase Location: 5749348-5749555 bp Feature: domain Description: GIIM Note: maturase Location: 5749348-5749555 bp Feature: domain Description: HNHc Note: nucleases Location: 5749858-5750032 bp Feature: domain Description: HNHc Note: nucleases Location: 5749858-5750032 bp Feature: gene Location: 5750476-5750775 bp Feature: gene Location: 5750798-5751013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1877 (pfam08974), MFS_MefA_like (cd06173), RVT-GII, GIIM (pfam08388), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159), O-antigen_lig (pfam13425), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
HipB (COG1396), Rve (COG3316), PRK03103 (DNA polymerase IV; Reviewed), Intron_maturas2 (pfam01348), HNHc (smart00507), PolY_Pol_V_umuC (cd01700), Acyl_transf_3 (pfam01757)