myRT

myRT report for GCA_000161435.1_ASM16143v1

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Seq: CM000744.1 Bacillus pseudomycoides strain Rock3-17 chromosome, whole genome shotgun sequence (5713954 bp)
Overview 1 RT 1: 2531909-2535600 bp 2 RT 2: 2544143-2554437 bp 3 RT 3: 2559966-2565275 bp 4 RT 4: 4865916-4873187 bp Neighborhood of RT #1 [2531909, 2535600] PRK03103 RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC Neighborhood of RT #2 [2544143, 2554437] MobL RVT_N RVT-GII GIIM HNHc RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [2559966, 2565283] pXO2-72 PRK06751 RVT_N RVT-GII GIIM HNHc AbrB RimL Neighborhood of RT #4 [4865916, 4873195] DUF3994 DUF4352 DUF5105 RVT-GII GIIM YheO CdsB Feature: gene Location: 2531909-2532061 bp Feature: gene Location: 2532194-2532346 bp Feature: domain Description: PRK03103 Location: 2532197-2532335 bp Feature: domain Description: PRK031 03 Location: 25321 97-2532335 bp Feature: gene Location: 2532536-2534407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532800-2533631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532800-2533631 bp Feature: domain Description: Intron_maturas2 Location: 2533712-2534045 bp Feature: domain Description: Intron_maturas2 Location: 253371 2-2534045 bp Feature: domain Description: HNHc Note: nucleases Location: 2534141-2534303 bp Feature: domain Description: HNHc Note: nucleases Location: 25341 41 -2534303 bp Feature: gene Location: 2535074-2535187 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2535077-2535182 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2535077-25351 82 bp Feature: gene Location: 2535340-2535600 bp Feature: gene Location: 2544143-2545318 bp Feature: domain Description: MobL Location: 2544149-2545217 bp Feature: domain Description: MobL Location: 25441 49-254521 7 bp Feature: gene Location: 2545333-2545782 bp Feature: gene Location: 2546680-2548524 bp Feature: RT Description: RVT_N Location: 2546737-2546980 bp Feature: RT Description: RVT_N Location: 2546737-2546980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2547037-2547712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2547037-254771 2 bp Feature: domain Description: GIIM Note: maturase Location: 2547787-2548021 bp Feature: domain Description: GIIM Note: maturase Location: 2547787-2548021 bp Feature: domain Description: HNHc Note: nucleases Location: 2548222-2548393 bp Feature: domain Description: HNHc Note: nucleases Location: 2548222-2548393 bp Feature: gene Location: 2548617-2548901 bp Feature: gene Location: 2549098-2549592 bp Feature: gene Location: 2550209-2552062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550473-2551313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550473-2551 31 3 bp Feature: domain Description: Intron_maturas2 Location: 2551403-2551751 bp Feature: domain Description: Intron_maturas2 Location: 2551 403-2551 751 bp Feature: domain Description: HNHc Note: nucleases Location: 2551844-2552009 bp Feature: domain Description: HNHc Note: nucleases Location: 2551 844-2552009 bp Feature: gene Location: 2552088-2553359 bp Feature: gene Location: 2553421-2554437 bp Feature: gene Location: 2559966-2560205 bp Feature: domain Description: pXO2-72 Location: 2559981-2560158 bp Feature: domain Description: pXO2-72 Location: 2559981 -25601 58 bp Feature: gene Location: 2560231-2560725 bp Feature: domain Description: PRK06751 Location: 2560240-2560723 bp Feature: domain Description: PRK06751 Location: 2560240-2560723 bp Feature: gene Location: 2561543-2563342 bp Feature: RT Description: RVT_N Location: 2561603-2561843 bp Feature: RT Description: RVT_N Location: 2561 603-2561 843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2561900-2562575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2561 900-2562575 bp Feature: domain Description: GIIM Note: maturase Location: 2562656-2562884 bp Feature: domain Description: GIIM Note: maturase Location: 2562656-2562884 bp Feature: domain Description: HNHc Note: nucleases Location: 2563097-2563247 bp Feature: domain Description: HNHc Note: nucleases Location: 2563097-2563247 bp Feature: gene Location: 2563635-2563913 bp Feature: domain Description: AbrB Location: 2563638-2563902 bp Feature: domain Description: AbrB Location: 2563638-2563902 bp Feature: gene Location: 2564720-2565283 bp Feature: domain Description: RimL Location: 2564756-2565275 bp Feature: domain Description: RimL Location: 2564756-2565275 bp Feature: gene Location: 4865916-4866878 bp Feature: domain Description: DUF3994 Location: 4866360-4866669 bp Feature: domain Description: DUF3994 Location: 4866360-4866669 bp Feature: gene Location: 4867111-4868166 bp Feature: domain Description: DUF4352 Location: 4867225-4867546 bp Feature: domain Description: DUF4352 Location: 4867225-4867546 bp Feature: domain Description: DUF5105 Location: 4867612-4868161 bp Feature: domain Description: DUF51 05 Location: 486761 2-48681 61 bp Feature: gene Location: 4868629-4869546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4868833-4868992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4868833-4868992 bp Feature: domain Description: GIIM Note: maturase Location: 4869244-4869460 bp Feature: domain Description: GIIM Note: maturase Location: 4869244-4869460 bp Feature: gene Location: 4871173-4871853 bp Feature: domain Description: YheO Location: 4871182-4871848 bp Feature: domain Description: YheO Location: 4871 1 82-4871 848 bp Feature: gene Location: 4871939-4873195 bp Feature: domain Description: CdsB Location: 4871945-4873187 bp Feature: domain Description: CdsB Location: 4871 945-48731 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PolY_Pol_V_umuC (cd01700), MobL (pfam18555), RVT_N (pfam13655), GIIM (pfam08388), pXO2-72 (pfam17443), PRK06751 (single-stranded DNA-binding protein; Provisional)
AbrB (pfam05145), RimL (COG1670), DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), YheO (COG2964), CdsB (COG3681)