myRT

myRT report for GCA_000161455.1_ASM16145v1

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Seq: CM000745.1 Bacillus pseudomycoides DSM 12442 chromosome, whole genome shotgun sequence (5782514 bp)
Overview 1 RT 1: 1916917-1923447 bp 2 RT 2: 4841117-4846011 bp 3 RT 3: 4891400-4896824 bp 4 RT 4: 4997576-5006960 bp 5 RT 5: 5390999-5397079 bp 6 RT 6: 5403045-5406914 bp Neighborhood of RT #1 [1916917, 1923524] Uup ABC_tran_CTD BaxI_1 RVT-GII GIIM HNHc PRK06752 AcrR Neighborhood of RT #2 [4841117, 4846011] Sfp RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #3 [4891400, 4896871] YolD RhaT RVT_N RVT-GII GIIM DUF2625 Neighborhood of RT #4 [4997576, 5007169] PRK12467 DDE_Tnp_1 RVT-GII GIIM DUF4352 DUF5105 DUF3994 Neighborhood of RT #5 [5390999, 5397079] TraC-F-type TraC-F-type Lysozyme_like RVT-GII HNHc Lysozyme_like Spr Neighborhood of RT #6 [5403045, 5406914] Spr RVT-GII Intron_maturas2 HNHc TraC-F-type Feature: gene Location: 1916917-1918803 bp Feature: domain Description: Uup Location: 1916920-1918504 bp Feature: domain Description: Uup Location: 1 91 6920-1 91 8504 bp Feature: domain Description: ABC_tran_CTD Location: 1918585-1918780 bp Feature: domain Description: ABC_tran_CTD Location: 1 91 8585-1 91 8780 bp Feature: gene Location: 1918879-1919610 bp Feature: domain Description: BaxI_1 Location: 1918894-1919599 bp Feature: domain Description: BaxI_1 Location: 1 91 8894-1 91 9599 bp Feature: gene Location: 1920565-1922427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1920859-1921564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 920859-1 921 564 bp Feature: domain Description: GIIM Note: maturase Location: 1921663-1921870 bp Feature: domain Description: GIIM Note: maturase Location: 1 921 663-1 921 870 bp Feature: domain Description: HNHc Note: nucleases Location: 1922173-1922347 bp Feature: domain Description: HNHc Note: nucleases Location: 1 9221 73-1 922347 bp Feature: gene Location: 1922792-1922950 bp Feature: domain Description: PRK06752 Location: 1922795-1922945 bp Feature: domain Description: PRK06752 Location: 1 922795-1 922945 bp Feature: gene Location: 1923150-1923524 bp Feature: domain Description: AcrR Location: 1923174-1923447 bp Feature: domain Description: AcrR Location: 1 9231 74-1 923447 bp Feature: gene Location: 4841117-4841665 bp Feature: gene Location: 4841814-4842578 bp Feature: domain Description: Sfp Location: 4841898-4842393 bp Feature: domain Description: Sfp Location: 4841 898-4842393 bp Feature: gene Location: 4842879-4844708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4843155-4843986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48431 55-4843986 bp Feature: domain Description: Intron_maturas2 Location: 4844061-4844355 bp Feature: domain Description: Intron_maturas2 Location: 4844061 -4844355 bp Feature: domain Description: HNHc Note: nucleases Location: 4844526-4844679 bp Feature: domain Description: HNHc Note: nucleases Location: 4844526-4844679 bp Feature: gene Location: 4845288-4845668 bp Feature: domain Description: DUF1738 Location: 4845432-4845585 bp Feature: domain Description: DUF1 738 Location: 4845432-4845585 bp Feature: gene Location: 4845730-4846011 bp Feature: gene Location: 4891400-4891657 bp Feature: domain Description: YolD Location: 4891406-4891649 bp Feature: domain Description: YolD Location: 4891 406-4891 649 bp Feature: gene Location: 4891904-4892827 bp Feature: domain Description: RhaT Location: 4891910-4892759 bp Feature: domain Description: RhaT Location: 4891 91 0-4892759 bp Feature: gene Location: 4893535-4895184 bp Feature: RT Description: RVT_N Location: 4893583-4893829 bp Feature: RT Description: RVT_N Location: 4893583-4893829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4893883-4894543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4893883-4894543 bp Feature: domain Description: GIIM Note: maturase Location: 4894609-4894843 bp Feature: domain Description: GIIM Note: maturase Location: 4894609-4894843 bp Feature: gene Location: 4896066-4896185 bp Feature: gene Location: 4896266-4896871 bp Feature: domain Description: DUF2625 Location: 4896272-4896824 bp Feature: domain Description: DUF2625 Location: 4896272-4896824 bp Feature: gene Location: 4997576-5000077 bp Feature: domain Description: PRK12467 Location: 4997585-5000048 bp Feature: domain Description: PRK1 2467 Location: 4997585-5000048 bp Feature: gene Location: 5001492-5002928 bp Feature: domain Description: DDE_Tnp_1 Location: 5001855-5002653 bp Feature: domain Description: DDE_Tnp_1 Location: 5001 855-5002653 bp Feature: gene Location: 5003539-5004456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5003743-5003902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5003743-5003902 bp Feature: domain Description: GIIM Note: maturase Location: 5004154-5004370 bp Feature: domain Description: GIIM Note: maturase Location: 50041 54-5004370 bp Feature: gene Location: 5004920-5005975 bp Feature: domain Description: DUF4352 Location: 5005034-5005355 bp Feature: domain Description: DUF4352 Location: 5005034-5005355 bp Feature: domain Description: DUF5105 Location: 5005421-5005970 bp Feature: domain Description: DUF51 05 Location: 5005421 -5005970 bp Feature: gene Location: 5006207-5007169 bp Feature: domain Description: DUF3994 Location: 5006651-5006960 bp Feature: domain Description: DUF3994 Location: 5006651 -5006960 bp Feature: gene Location: 5390999-5392939 bp Feature: domain Description: TraC-F-type Location: 5391365-5391953 bp Feature: domain Description: TraC-F-type Location: 5391 365-5391 953 bp Feature: domain Description: TraC-F-type Location: 5392307-5392829 bp Feature: domain Description: TraC-F-type Location: 5392307-5392829 bp Feature: gene Location: 5392985-5393443 bp Feature: domain Description: Lysozyme_like Location: 5393129-5393426 bp Feature: domain Description: Lysozyme_like Location: 53931 29-5393426 bp Feature: gene Location: 5394214-5395995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5394472-5395177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5394472-53951 77 bp Feature: domain Description: HNHc Note: nucleases Location: 5395738-5395873 bp Feature: domain Description: HNHc Note: nucleases Location: 5395738-5395873 bp Feature: gene Location: 5396059-5396742 bp Feature: domain Description: Lysozyme_like Location: 5396107-5396299 bp Feature: domain Description: Lysozyme_like Location: 53961 07-5396299 bp Feature: domain Description: Spr Location: 5396335-5396725 bp Feature: domain Description: Spr Location: 5396335-5396725 bp Feature: gene Location: 5396777-5397079 bp Feature: gene Location: 5403045-5403644 bp Feature: gene Location: 5403694-5404161 bp Feature: domain Description: Spr Location: 5403754-5404144 bp Feature: domain Description: Spr Location: 5403754-54041 44 bp Feature: gene Location: 5404278-5405090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5404284-5404365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5404284-5404365 bp Feature: domain Description: Intron_maturas2 Location: 5404437-5404734 bp Feature: domain Description: Intron_maturas2 Location: 5404437-5404734 bp Feature: domain Description: HNHc Note: nucleases Location: 5404911-5405064 bp Feature: domain Description: HNHc Note: nucleases Location: 540491 1 -5405064 bp Feature: gene Location: 5405163-5406152 bp Feature: domain Description: TraC-F-type Location: 5405166-5406102 bp Feature: domain Description: TraC-F-type Location: 54051 66-54061 02 bp Feature: gene Location: 5406159-5406914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABC_tran_CTD (pfam16326), BaxI_1 (pfam12811), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK06752 (single-stranded DNA-binding protein; Validated), AcrR (COG1309), Sfp (COG2091), Intron_maturas2 (pfam01348)
DUF1738 (pfam08401), YolD (pfam08863), RhaT (TIGR00776), RVT_N (pfam13655), DUF2625 (pfam10946), PRK12467 (peptide synthase; Provisional), DDE_Tnp_1 (pfam01609), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159)
TraC-F-type (TIGR02746), Lysozyme_like (pfam13702), Spr (COG0791)