myRT

myRT report for GCA_000161515.1_ASM16151v1

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Seq: CM000748.1 Bacillus thuringiensis serovar thuringiensis str. T01001 chromosome, whole genome shotgun sequence (6323123 bp)
Overview 1 RT 1: 5226215-5229636 bp 2 RT 2: 5622189-5632697 bp 3 RT 3: 5691707-5698277 bp 4 RT 4: 5712614-5717871 bp 5 RT 5: 5856128-5866405 bp 6 RT 6: 6180209-6188315 bp Neighborhood of RT #1 [5226215, 5229659] NlpD Spr RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [5622189, 5632697] rpsA TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII GIIM HNHc RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [5691707, 5698477] RapH_N TPR TPR RVT-GII HNHc Phage_int_SAM_1 Neighborhood of RT #4 [5712614, 5717987] PolY_Pol_V_umuC Asn_synthase RVT-GII HNHc Neighborhood of RT #5 [5856128, 5866518] Endotoxin_N delta_endotoxin_C Endotoxin_C2 Cry1Ac_D5 Endotoxin_C2 RVT-GII HNHc FrsA DsbA_FrnE Neighborhood of RT #6 [6180209, 6188315] put_anti_recept Tar Smc Smc RVT-GII GIIM group_II_RT_mat Feature: gene Location: 5226215-5226805 bp Feature: gene Location: 5226807-5227676 bp Ori: EEM32121.1 Feature: domain Description: NlpD Location: 5226822-5227248 bp Feature: domain Description: NlpD Location: 5226822-5227248 bp Feature: domain Description: Spr Location: 5227281-5227617 bp Feature: domain Description: Spr Location: 5227281 -522761 7 bp Feature: gene Location: 5227836-5229659 bp Ori: EEM32122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5228100-5228934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52281 00-5228934 bp Feature: domain Description: Intron_maturas2 Location: 5229003-5229342 bp Feature: domain Description: Intron_maturas2 Location: 5229003-5229342 bp Feature: domain Description: HNHc Note: nucleases Location: 5229480-5229636 bp Feature: domain Description: HNHc Note: nucleases Location: 5229480-5229636 bp Feature: gene Location: 5622189-5623172 bp Ori: EEM31765.1 Feature: domain Description: rpsA Location: 5622456-5622993 bp Feature: domain Description: rpsA Location: 5622456-5622993 bp Feature: gene Location: 5623431-5625197 bp Ori: EEM31766.1 Feature: domain Description: TraG-D_C Location: 5623443-5623761 bp Feature: domain Description: TraG-D_C Location: 5623443-5623761 bp Feature: domain Description: Ftsk_gamma Location: 5624187-5624367 bp Feature: domain Description: Ftsk_gamma Location: 56241 87-5624367 bp Feature: domain Description: Ftsk_gamma Location: 5624520-5624664 bp Feature: domain Description: Ftsk_gamma Location: 5624520-5624664 bp Feature: gene Location: 5625430-5627304 bp Ori: EEM31767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5625730-5626435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5625730-5626435 bp Feature: domain Description: GIIM Note: maturase Location: 5626549-5626717 bp Feature: domain Description: GIIM Note: maturase Location: 5626549-562671 7 bp Feature: domain Description: HNHc Note: nucleases Location: 5627065-5627230 bp Feature: domain Description: HNHc Note: nucleases Location: 5627065-5627230 bp Feature: gene Location: 5627977-5628498 bp Feature: gene Location: 5628637-5630460 bp Ori: EEM31769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5628907-5629735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5628907-5629735 bp Feature: domain Description: Intron_maturas2 Location: 5629807-5630125 bp Feature: domain Description: Intron_maturas2 Location: 5629807-56301 25 bp Feature: domain Description: HNHc Note: nucleases Location: 5630278-5630431 bp Feature: domain Description: HNHc Note: nucleases Location: 5630278-5630431 bp Feature: gene Location: 5631061-5632206 bp Feature: gene Location: 5632224-5632697 bp Feature: gene Location: 5691707-5692816 bp Ori: EEM31701.1 Feature: domain Description: RapH_N Location: 5691722-5691899 bp Feature: domain Description: RapH_N Location: 5691 722-5691 899 bp Feature: domain Description: TPR Location: 5692016-5692316 bp Feature: domain Description: TPR Location: 569201 6-569231 6 bp Feature: domain Description: TPR Location: 5692364-5692553 bp Feature: domain Description: TPR Location: 5692364-5692553 bp Feature: gene Location: 5693846-5695642 bp Ori: EEM31700.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5694104-5694809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56941 04-5694809 bp Feature: domain Description: HNHc Note: nucleases Location: 5695370-5695505 bp Feature: domain Description: HNHc Note: nucleases Location: 5695370-5695505 bp Feature: gene Location: 5695893-5696780 bp Feature: gene Location: 5697995-5698477 bp Ori: EEM31697.1 Feature: domain Description: Phage_int_SAM_1 Location: 5698028-5698277 bp Feature: domain Description: Phage_int_SAM_1 Location: 5698028-5698277 bp Feature: gene Location: 5712614-5713879 bp Ori: EEM31694.1 Feature: domain Description: PolY_Pol_V_umuC Location: 5712653-5713682 bp Feature: domain Description: PolY_Pol_V_umuC Location: 571 2653-571 3682 bp Feature: gene Location: 5714100-5715242 bp Ori: EEM31695.1 Feature: domain Description: Asn_synthase Location: 5714103-5715174 bp Feature: domain Description: Asn_synthase Location: 571 41 03-571 51 74 bp Feature: gene Location: 5716065-5717987 bp Ori: EEM31683.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5716455-5717160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571 6455-571 71 60 bp Feature: domain Description: HNHc Note: nucleases Location: 5717739-5717871 bp Feature: domain Description: HNHc Note: nucleases Location: 571 7739-571 7871 bp Feature: gene Location: 5856128-5856328 bp Feature: gene Location: 5856961-5860584 bp Ori: EEM31561.1 Feature: domain Description: Endotoxin_N Location: 5857162-5857708 bp Feature: domain Description: Endotoxin_N Location: 58571 62-5857708 bp Feature: domain Description: delta_endotoxin_C Location: 5857732-5858806 bp Feature: domain Description: delta_endotoxin_C Location: 5857732-5858806 bp Feature: domain Description: Endotoxin_C2 Location: 5858833-5859013 bp Feature: domain Description: Endotoxin_C2 Location: 5858833-585901 3 bp Feature: domain Description: Cry1Ac_D5 Location: 5859100-5859640 bp Feature: domain Description: Cry1 Ac_D5 Location: 58591 00-5859640 bp Feature: domain Description: Endotoxin_C2 Location: 5859742-5859853 bp Feature: domain Description: Endotoxin_C2 Location: 5859742-5859853 bp Feature: gene Location: 5861786-5863579 bp Ori: EEM31559.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5862068-5862764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5862068-5862764 bp Feature: domain Description: HNHc Note: nucleases Location: 5863325-5863463 bp Feature: domain Description: HNHc Note: nucleases Location: 5863325-5863463 bp Feature: gene Location: 5864685-5865587 bp Ori: EEM31557.1 Feature: domain Description: FrsA Location: 5864919-5865576 bp Feature: domain Description: FrsA Location: 586491 9-5865576 bp Feature: gene Location: 5865853-5866518 bp Ori: EEM31558.1 Feature: domain Description: DsbA_FrnE Location: 5865859-5866405 bp Feature: domain Description: DsbA_FrnE Location: 5865859-5866405 bp Feature: gene Location: 6180209-6184456 bp Ori: EEM31261.1 Feature: domain Description: put_anti_recept Location: 6180218-6181124 bp Feature: domain Description: put_anti_recept Location: 61 8021 8-61 81 1 24 bp Feature: domain Description: Tar Location: 6181133-6181340 bp Feature: domain Description: Tar Location: 61 81 1 33-61 81 340 bp Feature: domain Description: Smc Location: 6181493-6181907 bp Feature: domain Description: Smc Location: 61 81 493-61 81 907 bp Feature: domain Description: Smc Location: 6182333-6182600 bp Feature: domain Description: Smc Location: 61 82333-61 82600 bp Feature: gene Location: 6184468-6184836 bp Feature: gene Location: 6185094-6185903 bp Ori: EEM31238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6185100-6185544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 851 00-61 85544 bp Feature: domain Description: GIIM Note: maturase Location: 6185619-6185814 bp Feature: domain Description: GIIM Note: maturase Location: 61 8561 9-61 8581 4 bp Feature: gene Location: 6186096-6186374 bp Ori: EEM31239.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 6186213-6186366 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 61 8621 3-61 86366 bp Feature: gene Location: 6187377-6188315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), GIIM (pfam08388), RapH_N (pfam18801)
TPR (smart00028), Phage_int_SAM_1 (pfam02899), PolY_Pol_V_umuC (cd01700), Asn_synthase (pfam00733), Endotoxin_N (pfam03945), delta_endotoxin_C (cd04085), Endotoxin_C2 (pfam18449), Cry1Ac_D5 (pfam17997), FrsA (COG1073), DsbA_FrnE (cd03024)
put_anti_recept (TIGR01665), Tar (COG0840), Smc (COG1196), group_II_RT_mat (TIGR04416)