myRT

myRT report for GCA_000161615.1_ASM16161v1

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Seq: CM000753.1 Bacillus thuringiensis serovar berliner ATCC 10792 chromosome, whole genome shotgun sequence (6260142 bp)
Overview 1 RT 1: 2032291-2039917 bp 2 RT 2: 5535402-5542178 bp 3 RT 3: 5571467-5580148 bp 4 RT 4: 5770701-5780367 bp 5 RT 5: 5791727-5802056 bp 6 RT 6: 6027465-6033702 bp Neighborhood of RT #1 [2032291, 2039928] RhaT CzcO RVT-GII GIIM DDE_Tnp_1 YjaZ Neighborhood of RT #2 [5535402, 5542178] InsQ zf-IS66 DDE_Tnp_IS66 RVT-GII HNHc HU Neighborhood of RT #3 [5571467, 5580264] MobA_MobL RVT-GII HNHc Transposase_20 RVT-GII HNHc Neighborhood of RT #4 [5770701, 5780367] TrbL TraC-F-type RVT-GII HNHc TraC-F-type Neighborhood of RT #5 [5791727, 5802235] RVT-GII Intron_maturas2 HNHc RVT-GII GIIM HNHc TraG-D_C Ftsk_gamma Ftsk_gamma rpsA Neighborhood of RT #6 [6027465, 6033776] NlpD Spr RVT-GII Intron_maturas2 HNHc MFS_Azr1_MDR_like HTH_ARSR Feature: gene Location: 2032291-2033214 bp Ori: EEM66296.1 Feature: domain Description: RhaT Location: 2032324-2033152 bp Feature: domain Description: RhaT Location: 2032324-20331 52 bp Feature: gene Location: 2033360-2034787 bp Ori: EEM66295.1 Feature: domain Description: CzcO Location: 2033462-2034467 bp Feature: domain Description: CzcO Location: 2033462-2034467 bp Feature: gene Location: 2035667-2036998 bp Ori: EEM66294.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2035976-2036615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2035976-203661 5 bp Feature: domain Description: GIIM Note: maturase Location: 2036690-2036915 bp Feature: domain Description: GIIM Note: maturase Location: 2036690-203691 5 bp Feature: gene Location: 2037457-2038551 bp Ori: EEM66293.1 Feature: domain Description: DDE_Tnp_1 Location: 2037838-2038306 bp Feature: domain Description: DDE_Tnp_1 Location: 2037838-2038306 bp Feature: gene Location: 2038993-2039928 bp Ori: EEM66292.1 Feature: domain Description: YjaZ Location: 2039020-2039917 bp Feature: domain Description: YjaZ Location: 2039020-203991 7 bp Feature: gene Location: 5535402-5536490 bp Ori: EEM62743.1 Feature: domain Description: InsQ Location: 5535426-5536452 bp Feature: domain Description: InsQ Location: 5535426-5536452 bp Feature: gene Location: 5536858-5538279 bp Ori: EEM62742.1 Feature: domain Description: zf-IS66 Location: 5537167-5537305 bp Feature: domain Description: zf-IS66 Location: 55371 67-5537305 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5537353-5538160 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5537353-55381 60 bp Feature: gene Location: 5539262-5541058 bp Ori: EEM62741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5539520-5540225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5539520-5540225 bp Feature: domain Description: HNHc Note: nucleases Location: 5540786-5540921 bp Feature: domain Description: HNHc Note: nucleases Location: 5540786-5540921 bp Feature: gene Location: 5541582-5541854 bp Ori: EEM62720.1 Feature: domain Description: HU Location: 5541588-5541843 bp Feature: domain Description: HU Location: 5541 588-5541 843 bp Feature: gene Location: 5541966-5542178 bp Feature: gene Location: 5571467-5571706 bp Feature: gene Location: 5571895-5573964 bp Ori: EEM62719.1 Feature: domain Description: MobA_MobL Location: 5572006-5572627 bp Feature: domain Description: MobA_MobL Location: 5572006-5572627 bp Feature: gene Location: 5575363-5577156 bp Ori: EEM62708.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5575645-5576341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5575645-5576341 bp Feature: domain Description: HNHc Note: nucleases Location: 5576902-5577040 bp Feature: domain Description: HNHc Note: nucleases Location: 5576902-5577040 bp Feature: gene Location: 5577464-5577934 bp Ori: EEM62707.1 Feature: domain Description: Transposase_20 Location: 5577551-5577803 bp Feature: domain Description: Transposase_20 Location: 5577551 -5577803 bp Feature: gene Location: 5578342-5580264 bp Ori: EEM62706.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5578732-5579437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5578732-5579437 bp Feature: domain Description: HNHc Note: nucleases Location: 5580016-5580148 bp Feature: domain Description: HNHc Note: nucleases Location: 558001 6-55801 48 bp Feature: gene Location: 5770701-5774627 bp Ori: EEM62533.1 Feature: domain Description: TrbL Location: 5770992-5771478 bp Feature: domain Description: TrbL Location: 5770992-5771 478 bp Feature: gene Location: 5774658-5775626 bp Ori: EEM62534.1 Feature: domain Description: TraC-F-type Location: 5774685-5775465 bp Feature: domain Description: TraC-F-type Location: 5774685-5775465 bp Feature: gene Location: 5775918-5777840 bp Ori: EEM62535.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5776308-5777013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5776308-577701 3 bp Feature: domain Description: HNHc Note: nucleases Location: 5777592-5777724 bp Feature: domain Description: HNHc Note: nucleases Location: 5777592-5777724 bp Feature: gene Location: 5778479-5779450 bp Ori: EEM62536.1 Feature: domain Description: TraC-F-type Location: 5778899-5779373 bp Feature: domain Description: TraC-F-type Location: 5778899-5779373 bp Feature: gene Location: 5779453-5780367 bp Feature: gene Location: 5791727-5792200 bp Feature: gene Location: 5792218-5793363 bp Feature: gene Location: 5793964-5795787 bp Ori: EEM62521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5794234-5795062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5794234-5795062 bp Feature: domain Description: Intron_maturas2 Location: 5795134-5795452 bp Feature: domain Description: Intron_maturas2 Location: 57951 34-5795452 bp Feature: domain Description: HNHc Note: nucleases Location: 5795605-5795758 bp Feature: domain Description: HNHc Note: nucleases Location: 5795605-5795758 bp Feature: gene Location: 5795926-5796447 bp Feature: gene Location: 5797120-5798994 bp Ori: EEM62523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5797420-5798125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5797420-57981 25 bp Feature: domain Description: GIIM Note: maturase Location: 5798239-5798407 bp Feature: domain Description: GIIM Note: maturase Location: 5798239-5798407 bp Feature: domain Description: HNHc Note: nucleases Location: 5798755-5798920 bp Feature: domain Description: HNHc Note: nucleases Location: 5798755-5798920 bp Feature: gene Location: 5799227-5800993 bp Ori: EEM62524.1 Feature: domain Description: TraG-D_C Location: 5799239-5799557 bp Feature: domain Description: TraG-D_C Location: 5799239-5799557 bp Feature: domain Description: Ftsk_gamma Location: 5799983-5800163 bp Feature: domain Description: Ftsk_gamma Location: 5799983-58001 63 bp Feature: domain Description: Ftsk_gamma Location: 5800316-5800460 bp Feature: domain Description: Ftsk_gamma Location: 580031 6-5800460 bp Feature: gene Location: 5801252-5802235 bp Ori: EEM62525.1 Feature: domain Description: rpsA Location: 5801519-5802056 bp Feature: domain Description: rpsA Location: 5801 51 9-5802056 bp Feature: gene Location: 6027465-6028055 bp Feature: gene Location: 6028057-6028926 bp Ori: EEM62336.1 Feature: domain Description: NlpD Location: 6028072-6028498 bp Feature: domain Description: NlpD Location: 6028072-6028498 bp Feature: domain Description: Spr Location: 6028531-6028867 bp Feature: domain Description: Spr Location: 6028531 -6028867 bp Feature: gene Location: 6029086-6030909 bp Ori: EEM62337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6029350-6030184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6029350-60301 84 bp Feature: domain Description: Intron_maturas2 Location: 6030253-6030592 bp Feature: domain Description: Intron_maturas2 Location: 6030253-6030592 bp Feature: domain Description: HNHc Note: nucleases Location: 6030730-6030886 bp Feature: domain Description: HNHc Note: nucleases Location: 6030730-6030886 bp Feature: gene Location: 6032001-6033425 bp Ori: EEM62328.1 Feature: domain Description: MFS_Azr1_MDR_like Location: 6032013-6033390 bp Feature: domain Description: MFS_Azr1 _MDR_like Location: 603201 3-6033390 bp Feature: gene Location: 6033453-6033776 bp Ori: EEM62329.1 Feature: domain Description: HTH_ARSR Location: 6033486-6033702 bp Feature: domain Description: HTH_ARSR Location: 6033486-6033702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), CzcO (COG2072), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), YjaZ (COG5504), InsQ (COG0675), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), HNHc (smart00507)
HU (cd13831), MobA_MobL (pfam03389), Transposase_20 (pfam02371), TrbL (pfam04610), TraC-F-type (TIGR02746), Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), rpsA (TIGR00717), NlpD (COG0739)
Spr (COG0791), MFS_Azr1_MDR_like (cd17502), HTH_ARSR (smart00418)