myRT

myRT report for GCA_000161715.1_ASM16171v1

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Seq: CM000758.1 Bacillus thuringiensis IBL 200 chromosome, whole genome shotgun sequence (6731790 bp)
Overview 1 RT 1: 947904-953679 bp 2 RT 2: 5542535-5549011 bp 3 RT 3: 5670788-5676626 bp 4 RT 4: 5888104-5899214 bp 5 RT 5: 5952938-5959543 bp 6 RT 6: 6006808-6012389 bp 7 RT 7: 6510617-6516714 bp Neighborhood of RT #1 [947904, 953679] GlpA RVT-GII GIIM Peptidases_S8_Subtilisin_subset Neighborhood of RT #2 [5542535, 5549011] RapH_N TPR TPR RVT-GII Intron_maturas2 HNHc beta_clamp Neighborhood of RT #3 [5670788, 5677345] RVT-GII HNHc CwlT_like DUF4046 Neighborhood of RT #4 [5888104, 5899261] RapH_N TPR_12 PA14 Binary_toxB Binary_toxB_2 Binary_toxB_3 RVT-GII HNHc Peptidases_S8_Lantibiotic_specific_protease Lant_dehydr_N thiopep_ocin Neighborhood of RT #5 [5952938, 5959560] YdiL RVT-GII HNHc DUF2325 Neighborhood of RT #6 [6006808, 6012391] TRX_family RVT-GII HNHc RicinB_lectin_2 RicinB_lectin_2 Toxin_10 Neighborhood of RT #7 [6510617, 6516714] COG4412 PRTRC_ThiF RVT-GII Intron_maturas2 HNHc E1_enzyme_family Feature: gene Location: 947904-949586 bp Feature: domain Description: GlpA Location: 947931-949542 bp Feature: domain Description: GlpA Location: 947931 -949542 bp Feature: gene Location: 950246-950398 bp Feature: gene Location: 950743-951543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950767-951181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950767-951 1 81 bp Feature: domain Description: GIIM Note: maturase Location: 951262-951490 bp Feature: domain Description: GIIM Note: maturase Location: 951 262-951 490 bp Feature: gene Location: 952000-952878 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 952126-952774 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 9521 26-952774 bp Feature: gene Location: 952894-953679 bp Feature: gene Location: 5542535-5543629 bp Feature: domain Description: RapH_N Location: 5542556-5542733 bp Feature: domain Description: RapH_N Location: 5542556-5542733 bp Feature: domain Description: TPR Location: 5542847-5543132 bp Feature: domain Description: TPR Location: 5542847-55431 32 bp Feature: domain Description: TPR Location: 5543174-5543519 bp Feature: domain Description: TPR Location: 55431 74-554351 9 bp Feature: gene Location: 5543629-5543913 bp Feature: gene Location: 5545130-5546953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5545394-5546228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5545394-5546228 bp Feature: domain Description: Intron_maturas2 Location: 5546297-5546636 bp Feature: domain Description: Intron_maturas2 Location: 5546297-5546636 bp Feature: domain Description: HNHc Note: nucleases Location: 5546774-5546930 bp Feature: domain Description: HNHc Note: nucleases Location: 5546774-5546930 bp Feature: gene Location: 5547727-5548110 bp Feature: domain Description: beta_clamp Location: 5547772-5548096 bp Feature: domain Description: beta_clamp Location: 5547772-5548096 bp Feature: gene Location: 5548754-5549011 bp Feature: gene Location: 5670788-5670934 bp Feature: gene Location: 5671886-5672173 bp Feature: gene Location: 5672883-5674679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5673141-5673846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56731 41 -5673846 bp Feature: domain Description: HNHc Note: nucleases Location: 5674407-5674542 bp Feature: domain Description: HNHc Note: nucleases Location: 5674407-5674542 bp Feature: gene Location: 5675452-5675619 bp Feature: domain Description: CwlT_like Location: 5675494-5675602 bp Feature: domain Description: CwlT_like Location: 5675494-5675602 bp Feature: gene Location: 5676350-5677345 bp Feature: domain Description: DUF4046 Location: 5676383-5676626 bp Feature: domain Description: DUF4046 Location: 5676383-5676626 bp Feature: gene Location: 5888104-5888913 bp Feature: domain Description: RapH_N Location: 5888128-5888302 bp Feature: domain Description: RapH_N Location: 58881 28-5888302 bp Feature: domain Description: TPR_12 Location: 5888632-5888824 bp Feature: domain Description: TPR_1 2 Location: 5888632-5888824 bp Feature: gene Location: 5889407-5891746 bp Feature: domain Description: PA14 Location: 5889548-5889866 bp Feature: domain Description: PA1 4 Location: 5889548-5889866 bp Feature: domain Description: Binary_toxB Location: 5890061-5890286 bp Feature: domain Description: Binary_toxB Location: 5890061 -5890286 bp Feature: domain Description: Binary_toxB_2 Location: 5890298-5890868 bp Feature: domain Description: Binary_toxB_2 Location: 5890298-5890868 bp Feature: domain Description: Binary_toxB_3 Location: 5890907-5891216 bp Feature: domain Description: Binary_toxB_3 Location: 5890907-5891 21 6 bp Feature: gene Location: 5892337-5894259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5892727-5893432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5892727-5893432 bp Feature: domain Description: HNHc Note: nucleases Location: 5894011-5894143 bp Feature: domain Description: HNHc Note: nucleases Location: 589401 1 -58941 43 bp Feature: gene Location: 5895203-5896177 bp Feature: domain Description: Peptidases_S8_Lantibiotic_specific_protease Location: 5895317-5896061 bp Feature: domain Description: Peptidases_S8_Lantibiotic_specific_protease Location: 589531 7-5896061 bp Feature: gene Location: 5896190-5899261 bp Feature: domain Description: Lant_dehydr_N Location: 5896331-5898230 bp Feature: domain Description: Lant_dehydr_N Location: 5896331 -5898230 bp Feature: domain Description: thiopep_ocin Location: 5898446-5899214 bp Feature: domain Description: thiopep_ocin Location: 5898446-589921 4 bp Feature: gene Location: 5952938-5953735 bp Feature: domain Description: YdiL Location: 5953055-5953721 bp Feature: domain Description: YdiL Location: 5953055-5953721 bp Feature: gene Location: 5954897-5955016 bp Feature: gene Location: 5956181-5957980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5956478-5957171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5956478-59571 71 bp Feature: domain Description: HNHc Note: nucleases Location: 5957729-5957867 bp Feature: domain Description: HNHc Note: nucleases Location: 5957729-5957867 bp Feature: gene Location: 5959040-5959237 bp Feature: gene Location: 5959312-5959560 bp Feature: domain Description: DUF2325 Location: 5959318-5959543 bp Feature: domain Description: DUF2325 Location: 595931 8-5959543 bp Feature: gene Location: 6006808-6007011 bp Feature: domain Description: TRX_family Location: 6006823-6006964 bp Feature: domain Description: TRX_family Location: 6006823-6006964 bp Feature: gene Location: 6007372-6007635 bp Feature: gene Location: 6008584-6009534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6008866-6009457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6008866-6009457 bp Feature: gene Location: 6009695-6010378 bp Feature: domain Description: HNHc Note: nucleases Location: 6010109-6010262 bp Feature: domain Description: HNHc Note: nucleases Location: 601 01 09-601 0262 bp Feature: gene Location: 6011267-6012391 bp Feature: domain Description: RicinB_lectin_2 Location: 6011426-6011591 bp Feature: domain Description: RicinB_lectin_2 Location: 601 1 426-601 1 591 bp Feature: domain Description: RicinB_lectin_2 Location: 6011633-6011786 bp Feature: domain Description: RicinB_lectin_2 Location: 601 1 633-601 1 786 bp Feature: domain Description: Toxin_10 Location: 6011906-6012389 bp Feature: domain Description: Toxin_1 0 Location: 601 1 906-601 2389 bp Feature: gene Location: 6510617-6511096 bp Feature: domain Description: COG4412 Location: 6510659-6510998 bp Feature: domain Description: COG441 2 Location: 651 0659-651 0998 bp Feature: gene Location: 6512802-6513248 bp Feature: domain Description: PRTRC_ThiF Location: 6512940-6513219 bp Feature: domain Description: PRTRC_ThiF Location: 651 2940-651 321 9 bp Feature: gene Location: 6513608-6515548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6513938-6514775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 3938-651 4775 bp Feature: domain Description: Intron_maturas2 Location: 6514907-6515156 bp Feature: domain Description: Intron_maturas2 Location: 651 4907-651 51 56 bp Feature: domain Description: HNHc Note: nucleases Location: 6515342-6515495 bp Feature: domain Description: HNHc Note: nucleases Location: 651 5342-651 5495 bp Feature: gene Location: 6516117-6516299 bp Feature: domain Description: E1_enzyme_family Location: 6516165-6516282 bp Feature: domain Description: E1 _enzyme_family Location: 651 61 65-651 6282 bp Feature: gene Location: 6516313-6516714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlpA (COG0578), RVT-GII, GIIM (pfam08388), Peptidases_S8_Subtilisin_subset (cd07477), RapH_N (pfam18801), TPR (smart00028), Intron_maturas2 (pfam01348), HNHc (smart00507), beta_clamp (cl29549), CwlT_like
DUF4046 (pfam13255), TPR_12 (pfam13424), PA14 (smart00758), Binary_toxB (pfam03495), Binary_toxB_2 (pfam17475), Binary_toxB_3 (pfam17476), Peptidases_S8_Lantibiotic_specific_protease (cd07482), Lant_dehydr_N (pfam04738), thiopep_ocin (TIGR03891), YdiL (COG1266)
DUF2325 (pfam10087), TRX_family (cd02947), RicinB_lectin_2 (pfam14200), Toxin_10 (pfam05431), COG4412 (Bacillopeptidase F, M6 metalloprotease family ), PRTRC_ThiF (TIGR03736), E1_enzyme_family (cl22428)