myRT

myRT report for GCA_000162015.1_ASM16201v1

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Seq: GG697151.2 Faecalibacterium prausnitzii A2-165 genomic scaffold Scfld2, whole genome shotgun sequence (555491 bp)
Overview 1 RT 1: 136679-141610 bp 2 RT 2: 512174-515988 bp Neighborhood of RT #1 [136679, 142371] CxxCG_CxxCG_HTH GepA RVT-UG2 HTH_XRE Eco57I Neighborhood of RT #2 [512174, 515988] pfam03781 Avd_like RVT-DGRs Feature: gene Location: 136679-137065 bp Feature: gene Location: 137066-138088 bp Ori: EEU96901.1 Feature: domain Description: CxxCG_CxxCG_HTH Location: 137117-137492 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 1 371 1 7-1 37492 bp Feature: domain Description: GepA Location: 137630-138017 bp Feature: domain Description: GepA Location: 1 37630-1 3801 7 bp Feature: gene Location: 138484-139800 bp Ori: EEU96902.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 138682-139513 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 38682-1 3951 3 bp Feature: gene Location: 139859-140161 bp Ori: EEU96903.1 Feature: domain Description: HTH_XRE Location: 139868-140039 bp Feature: domain Description: HTH_XRE Location: 1 39868-1 40039 bp Feature: gene Location: 140461-142371 bp Ori: EEU96904.1 Feature: domain Description: Eco57I Location: 141319-141610 bp Feature: domain Description: Eco57I Location: 1 41 31 9-1 41 61 0 bp Feature: gene Location: 512174-513271 bp Ori: EEU96517.1 Feature: domain Description: pfam03781 Location: 512414-512732 bp Feature: domain Description: pfam03781 Location: 51 241 4-51 2732 bp Feature: gene Location: 513343-513687 bp Ori: EEU96518.1 Feature: domain Description: Avd_like Location: 513367-513679 bp Feature: domain Description: Avd_like Location: 51 3367-51 3679 bp Feature: gene Location: 513947-515260 bp Ori: EEU96519.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 514328-514994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51 4328-51 4994 bp Feature: gene Location: 515239-515595 bp Feature: gene Location: 515608-515988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600), RVT-UG2, HTH_XRE (smart00530), Eco57I (pfam07669), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs

Seq: GG697157.2 Faecalibacterium prausnitzii A2-165 genomic scaffold Scfld8, whole genome shotgun sequence (134657 bp)
Overview 1 RT 1: 108275-112434 bp Neighborhood of RT #1 [108275, 112493] Avd_like RVT-DGRs bZIP_2 Feature: gene Location: 108275-108592 bp Feature: gene Location: 108558-108917 bp Ori: EEU94995.1 Feature: domain Description: Avd_like Location: 108609-108894 bp Feature: domain Description: Avd_like Location: 108609-108894 bp Feature: gene Location: 109276-110529 bp Ori: EEU94996.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109576-110221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109576-1102 2 1 bp Feature: gene Location: 110573-112297 bp Feature: gene Location: 112290-112493 bp Ori: EEU94998.1 Feature: domain Description: bZIP_2 Location: 112347-112434 bp Feature: domain Description: bZIP_2 Location: 112 347-112 434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, bZIP_2 (pfam07716)

Seq: GG697152.2 Faecalibacterium prausnitzii A2-165 genomic scaffold Scfld3, whole genome shotgun sequence (413561 bp)
Overview 1 RT 1: 91783-95802 bp Neighborhood of RT #1 [91783, 95918] RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 91783-91946 bp Feature: gene Location: 92041-92706 bp Feature: gene Location: 93282-95114 bp Ori: EEU96266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93546-94377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 546-943 77 bp Feature: domain Description: Intron_maturas2 Location: 94449-94764 bp Feature: domain Description: Intron_maturas2 Location: 94449-94764 bp Feature: domain Description: HNHc Note: nucleases Location: 94911-95085 bp Feature: domain Description: HNHc Note: nucleases Location: 94911-95085 bp Feature: gene Location: 95253-95492 bp Feature: gene Location: 95616-95918 bp Ori: EEU96268.1 Feature: domain Description: PrgI Location: 95622-95802 bp Feature: domain Description: PrgI Location: 95622-95802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666)

Seq: GG697155.2 Faecalibacterium prausnitzii A2-165 genomic scaffold Scfld6, whole genome shotgun sequence (164345 bp)
Overview 1 RT 1: 153246-158163 bp Neighborhood of RT #1 [153246, 158291] RVT-GII HNHc TraC-F-type TraC-F-type Feature: gene Location: 153246-154073 bp Feature: gene Location: 154143-154328 bp Feature: gene Location: 154795-156768 bp Ori: EEU95278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155131-155869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155131-155869 bp Feature: domain Description: HNHc Note: nucleases Location: 156418-156589 bp Feature: domain Description: HNHc Note: nucleases Location: 1564 18-156589 bp Feature: gene Location: 156859-157932 bp Ori: EEU95279.1 Feature: domain Description: TraC-F-type Location: 156886-157816 bp Feature: domain Description: TraC-F-type Location: 156886-157816 bp Feature: gene Location: 157926-158291 bp Ori: EEU95280.1 Feature: domain Description: TraC-F-type Location: 157938-158163 bp Feature: domain Description: TraC-F-type Location: 157938-158163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746)

Seq: GG697150.2 Faecalibacterium prausnitzii A2-165 genomic scaffold Scfld1, whole genome shotgun sequence (556161 bp)
Overview 1 RT 1: 117451-122709 bp Neighborhood of RT #1 [117451, 122717] T4SS-DNA_transf Maff2 RVT-GII HNHc YozG TnpV Feature: gene Location: 117451-118890 bp Ori: EEU97547.1 Feature: domain Description: T4SS-DNA_transf Location: 117538-118738 bp Feature: domain Description: T4SS-DNA_transf Location: 1175 38-118738 bp Feature: gene Location: 119031-119162 bp Ori: EEU97548.1 Feature: domain Description: Maff2 Location: 119034-119157 bp Feature: domain Description: Maff2 Location: 119034-11915 7 bp Feature: gene Location: 119877-121754 bp Ori: EEU97549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120204-120942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120204-120942 bp Feature: domain Description: HNHc Note: nucleases Location: 121479-121641 bp Feature: domain Description: HNHc Note: nucleases Location: 121479-121641 bp Feature: gene Location: 122078-122380 bp Ori: EEU97550.1 Feature: domain Description: YozG Location: 122117-122318 bp Feature: domain Description: YozG Location: 122117-122318 bp Feature: gene Location: 122340-122717 bp Ori: EEU97551.1 Feature: domain Description: TnpV Location: 122385-122709 bp Feature: domain Description: TnpV Location: 122385 -122709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), YozG (COG3655), TnpV (pfam14198)