myRT

myRT report for GCA_000162135.1_ASM16213v1

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Seq: GG705212.1 Bacteroides sp. 2_1_16 genomic scaffold supercont1.4, whole genome shotgun sequence (582500 bp)
Overview 1 RT 1: 164408-169893 bp Neighborhood of RT #1 [164408, 169893] HTH_17 COG3943 RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 164408-164713 bp Ori: EEZ24571.1 Feature: domain Description: HTH_17 Location: 164546-164675 bp Feature: domain Description: HTH_1 7 Location: 1 64546-1 64675 bp Feature: gene Location: 164791-165153 bp Ori: EEZ24572.1 Feature: domain Description: COG3943 Location: 164830-165079 bp Feature: domain Description: COG3943 Location: 1 64830-1 65079 bp Feature: gene Location: 165367-167175 bp Ori: EEZ24573.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165631-166453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65631 -1 66453 bp Feature: domain Description: Intron_maturas2 Location: 166579-166834 bp Feature: domain Description: Intron_maturas2 Location: 1 66579-1 66834 bp Feature: domain Description: HNHc Note: nucleases Location: 167008-167149 bp Feature: domain Description: HNHc Note: nucleases Location: 1 67008-1 671 49 bp Feature: gene Location: 167726-168973 bp Ori: EEZ24574.1 Feature: domain Description: Arm-DNA-bind_5 Location: 167834-168089 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 67834-1 68089 bp Feature: domain Description: Phage_int_SAM_5 Location: 168128-168449 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 681 28-1 68449 bp Feature: domain Description: INTN1_C_like Location: 168488-168956 bp Feature: domain Description: INTN1 _C_like Location: 1 68488-1 68956 bp Feature: gene Location: 169255-169893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: GG705221.1 Bacteroides sp. 2_1_16 genomic scaffold supercont1.13, whole genome shotgun sequence (2471 bp)
Overview 1 RT 1: 321-1956 bp Neighborhood of RT #1 [321, 2348] RVT_N RVT-GII GIIM Feature: gene Location: 321-443 bp Feature: gene Location: 423-539 bp Feature: gene Location: 681-2348 bp Ori: EEZ23730.1 Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 3-1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 172 5-1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: GG705209.1 Bacteroides sp. 2_1_16 genomic scaffold supercont1.1, whole genome shotgun sequence (2152962 bp)
Overview 1 RT 1: 107245-113772 bp 2 RT 2: 1192964-1203660 bp 3 RT 3: 1243622-1248318 bp Neighborhood of RT #1 [107245, 113780] RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [1192964, 1203671] DUF1566 RVT-DGRs Avd_like DUF1566 Neighborhood of RT #3 [1243622, 1248318] HTH_Hin_like RVT-UG27 Feature: gene Location: 107245-109464 bp Feature: gene Location: 109671-110027 bp Feature: gene Location: 109879-110781 bp Ori: EEZ26480.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109984-110533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109984-11053 3 bp Feature: gene Location: 110923-112716 bp Ori: EEZ26481.1 Gene: rpsA Feature: domain Description: rpsA Location: 111001-112609 bp Feature: domain Description: rpsA Location: 111001-112609 bp Feature: gene Location: 112866-113780 bp Ori: EEZ26482.1 Gene: rnz Feature: domain Description: RNase_Z Location: 112881-113772 bp Feature: domain Description: RNase_Z Location: 112881-113 772 bp Feature: gene Location: 1192964-1193512 bp Feature: gene Location: 1195333-1195686 bp Feature: gene Location: 1195677-1197098 bp Ori: EEZ27430.1 Feature: domain Description: DUF1566 Location: 1195749-1195893 bp Feature: domain Description: DUF1566 Location: 1195749-1195893 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1196082-1196823 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1196082-1196823 bp Feature: gene Location: 1197111-1197512 bp Ori: EEZ27431.1 Feature: domain Description: Avd_like Location: 1197150-1197489 bp Feature: domain Description: Avd_like Location: 1197150-1197489 bp Feature: gene Location: 1197642-1203671 bp Ori: EEZ27432.1 Feature: domain Description: DUF1566 Location: 1203357-1203660 bp Feature: domain Description: DUF1566 Location: 1203 3 57-1203 660 bp Feature: gene Location: 1243622-1244233 bp Feature: gene Location: 1244223-1244546 bp Ori: EEZ27474.1 Feature: domain Description: HTH_Hin_like Location: 1244274-1244376 bp Feature: domain Description: HTH_Hin_like Location: 1244274-12443 76 bp Feature: gene Location: 1244543-1245811 bp Ori: EEZ27475.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1244732-1245368 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 124473 2-12453 68 bp Feature: gene Location: 1246836-1247294 bp Feature: gene Location: 1247329-1248318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), HTH_Hin_like (cd00569), RVT-UG27