myRT

myRT report for GCA_000162155.1_ASM16215v1

Download annotations/find similar RTs

Seq: GG705177.1 Bacteroides sp. 2_1_22 genomic scaffold supercont1.5, whole genome shotgun sequence (414061 bp)
Overview 1 RT 1: 1203-7372 bp 2 RT 2: 41054-47700 bp 3 RT 3: 208875-220332 bp Neighborhood of RT #1 [1203, 7374] Mfa_like_1 DUF1566 HTH_28 RVT_N RVT-GII GDPD_like_2 SusD-like_3 SusD_RagB Neighborhood of RT #2 [41054, 47738] TraG-D_C dam RVT-GII Intron_maturas2 dnaG NlpD Neighborhood of RT #3 [208875, 220463] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1203-2483 bp Ori: EEZ02426.1 Feature: domain Description: Mfa_like_1 Location: 1275-1686 bp Feature: domain Description: Mfa_like_1 Location: 1 275-1 686 bp Feature: domain Description: DUF1566 Location: 2172-2472 bp Feature: domain Description: DUF1 566 Location: 21 72-2472 bp Feature: gene Location: 2820-3110 bp Ori: EEZ02427.1 Feature: domain Description: HTH_28 Location: 2844-2988 bp Feature: domain Description: HTH_28 Location: 2844-2988 bp Feature: gene Location: 3406-3756 bp Ori: EEZ02428.1 Feature: domain Description: RVT_N Location: 3409-3607 bp Feature: domain Description: RVT_N Location: 3409-3607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661-3730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661 -3730 bp Feature: gene Location: 4728-5489 bp Ori: EEZ02429.1 Feature: domain Description: GDPD_like_2 Location: 4797-5454 bp Feature: domain Description: GDPD_like_2 Location: 4797-5454 bp Feature: gene Location: 5533-7374 bp Ori: EEZ02430.1 Feature: domain Description: SusD-like_3 Location: 5836-6193 bp Feature: domain Description: SusD-like_3 Location: 5836-61 93 bp Feature: domain Description: SusD_RagB Location: 6535-7372 bp Feature: domain Description: SusD_RagB Location: 6535-7372 bp Feature: gene Location: 41054-42763 bp Ori: EEZ02457.1 Feature: domain Description: TraG-D_C Location: 42131-42464 bp Feature: domain Description: TraG-D_C Location: 421 31 -42464 bp Feature: gene Location: 42973-43545 bp Ori: EEZ02458.1 Feature: domain Description: dam Location: 42997-43537 bp Feature: domain Description: dam Location: 42997-43537 bp Feature: gene Location: 44732-46540 bp Ori: EEZ02459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44996-45818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44996-4581 8 bp Feature: domain Description: Intron_maturas2 Location: 45887-46196 bp Feature: domain Description: Intron_maturas2 Location: 45887-461 96 bp Feature: gene Location: 47111-47269 bp Ori: EEZ02460.1 Feature: domain Description: dnaG Location: 47180-47261 bp Feature: domain Description: dnaG Location: 471 80-47261 bp Feature: gene Location: 47286-47738 bp Ori: EEZ02462.1 Feature: domain Description: NlpD Location: 47316-47700 bp Feature: domain Description: NlpD Location: 4731 6-47700 bp Feature: gene Location: 208875-208976 bp Feature: gene Location: 208930-211137 bp Feature: gene Location: 211345-212475 bp Ori: EEZ02598.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 211666-212209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 1 666-21 2209 bp Feature: gene Location: 212526-218495 bp Ori: EEZ02599.1 Feature: domain Description: DUF4011 Location: 213684-214197 bp Feature: domain Description: DUF401 1 Location: 21 3684-21 41 97 bp Feature: domain Description: DEXXQc_SF1 Location: 214536-214965 bp Feature: domain Description: DEXXQc_SF1 Location: 21 4536-21 4965 bp Feature: domain Description: DEXXQc_SF1 Location: 215967-216723 bp Feature: domain Description: DEXXQc_SF1 Location: 21 5967-21 6723 bp Feature: domain Description: TIGR00376 Location: 216852-217242 bp Feature: domain Description: TIGR00376 Location: 21 6852-21 7242 bp Feature: domain Description: MTES_1575 Location: 217395-217680 bp Feature: domain Description: MTES_1 575 Location: 21 7395-21 7680 bp Feature: domain Description: DUF3320 Location: 218010-218145 bp Feature: domain Description: DUF3320 Location: 21 801 0-21 81 45 bp Feature: gene Location: 218664-220463 bp Ori: EEZ02600.1 Gene: rpsA Feature: domain Description: rpsA Location: 218733-220332 bp Feature: domain Description: rpsA Location: 21 8733-220332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), DUF1566 (pfam07603), HTH_28 (pfam13518), RVT_N (pfam13655), RVT-GII, GDPD_like_2 (cd08582), SusD-like_3 (pfam14322), SusD_RagB (pfam07980), TraG-D_C (pfam12696), dam (TIGR00571)
Intron_maturas2 (pfam01348), dnaG (TIGR01391), NlpD (COG0739), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: GG705190.1 Bacteroides sp. 2_1_22 genomic scaffold supercont1.18, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 107-1889 bp Neighborhood of RT #1 [107, 1918] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1918 bp Ori: EEZ01460.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: domain Description: Intron_maturas2 Location: 1268-1583 bp Feature: domain Description: Intron_maturas2 Location: 12 68-1583 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: GG705189.1 Bacteroides sp. 2_1_22 genomic scaffold supercont1.17, whole genome shotgun sequence (2493 bp)
Overview 1 RT 1: 573-2355 bp Neighborhood of RT #1 [573, 2384] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 573-2384 bp Ori: EEZ01461.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837-1659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 7-1659 bp Feature: domain Description: Intron_maturas2 Location: 1728-2055 bp Feature: domain Description: Intron_maturas2 Location: 1728-2055 bp Feature: domain Description: HNHc Note: nucleases Location: 2211-2355 bp Feature: domain Description: HNHc Note: nucleases Location: 2211-23 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: GG705175.1 Bacteroides sp. 2_1_22 genomic scaffold supercont1.3, whole genome shotgun sequence (1143623 bp)
Overview 1 RT 1: 538578-545218 bp 2 RT 2: 768672-772203 bp Neighborhood of RT #1 [538578, 545274] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Neighborhood of RT #2 [768672, 772203] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 538578-540281 bp Ori: EEZ03540.1 Feature: domain Description: REC Location: 539397-539628 bp Feature: domain Description: REC Location: 539397-539628 bp Feature: gene Location: 540278-540928 bp Feature: gene Location: 540900-543119 bp Ori: EEZ03542.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 541101-541686 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54 1101-54 1686 bp Feature: gene Location: 543395-544360 bp Ori: EEZ03543.1 Feature: domain Description: Phage_int_SAM_5 Location: 543428-543671 bp Feature: domain Description: Phage_int_SAM_5 Location: 54 34 28-54 3671 bp Feature: domain Description: INTN1_C_like Location: 543752-544274 bp Feature: domain Description: INTN1_C_like Location: 54 3752-54 4 274 bp Feature: gene Location: 544696-545274 bp Ori: EEZ03544.1 Feature: domain Description: NGN_SP_UpxY Location: 544774-545056 bp Feature: domain Description: NGN_SP_UpxY Location: 54 4 774 -54 5056 bp Feature: domain Description: KOW_NusG Location: 545107-545218 bp Feature: domain Description: KOW_NusG Location: 54 5107-54 5218 bp Feature: gene Location: 768672-769481 bp Ori: EEZ03734.1 Feature: domain Description: DUF1566 Location: 769203-769452 bp Feature: domain Description: DUF1566 Location: 769203-7694 52 bp Feature: gene Location: 769628-770035 bp Ori: EEZ03735.1 Feature: domain Description: Avd_like Location: 769661-769970 bp Feature: domain Description: Avd_like Location: 769661-769970 bp Feature: gene Location: 770050-771471 bp Ori: EEZ03736.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 770425-771151 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7704 25-771151 bp Feature: gene Location: 771434-771712 bp Feature: gene Location: 771916-772203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs