myRT

myRT report for GCA_000162515.1_ASM16251v1

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Seq: GG774702.1 Bacteroides sp. 1_1_14 genomic scaffold supercont1.1, whole genome shotgun sequence (931059 bp)
Overview 1 RT 1: 202874-206923 bp 2 RT 2: 721127-730576 bp Neighborhood of RT #1 [202874, 207000] RVT-DGRs TipAS COG2369 LPD3 Neighborhood of RT #2 [721127, 730926] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 202874-203116 bp Feature: gene Location: 203320-203805 bp Feature: gene Location: 203802-205103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 204012-204690 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20401 2-204690 bp Feature: gene Location: 205479-205712 bp Feature: gene Location: 205810-207000 bp Feature: domain Description: TipAS Location: 205831-206116 bp Feature: domain Description: TipAS Location: 205831 -2061 1 6 bp Feature: domain Description: COG2369 Location: 206236-206422 bp Feature: domain Description: COG2369 Location: 206236-206422 bp Feature: domain Description: LPD3 Location: 206641-206923 bp Feature: domain Description: LPD3 Location: 206641 -206923 bp Feature: gene Location: 721127-721438 bp Feature: gene Location: 721921-723725 bp Feature: gene Location: 723931-725064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 724255-724807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 724255-724807 bp Feature: gene Location: 725098-730926 bp Feature: domain Description: DUF4011 Location: 726253-726766 bp Feature: domain Description: DUF401 1 Location: 726253-726766 bp Feature: domain Description: DEXXQc_SF1 Location: 727105-727705 bp Feature: domain Description: DEXXQc_SF1 Location: 7271 05-727705 bp Feature: domain Description: DEXXQc_SF1 Location: 728542-729292 bp Feature: domain Description: DEXXQc_SF1 Location: 728542-729292 bp Feature: domain Description: TIGR00376 Location: 729424-729814 bp Feature: domain Description: TIGR00376 Location: 729424-72981 4 bp Feature: domain Description: MTES_1575 Location: 729964-730252 bp Feature: domain Description: MTES_1 575 Location: 729964-730252 bp Feature: domain Description: DUF3320 Location: 730432-730576 bp Feature: domain Description: DUF3320 Location: 730432-730576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: GG774706.1 Bacteroides sp. 1_1_14 genomic scaffold supercont1.5, whole genome shotgun sequence (621995 bp)
Overview 1 RT 1: 158638-160430 bp Neighborhood of RT #1 [158638, 160846] RVT-DGRs Feature: gene Location: 158638-158880 bp Feature: gene Location: 159060-159545 bp Feature: gene Location: 159542-160846 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 159752-160430 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 159752 -160430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: GG774729.1 Bacteroides sp. 1_1_14 genomic scaffold supercont1.28, whole genome shotgun sequence (2366 bp)
Overview 1 RT 1: 199-1879 bp Neighborhood of RT #1 [199, 2265] RVT_N RVT-GII GIIM Feature: gene Location: 199-348 bp Feature: gene Location: 604-2265 bp Feature: RT Description: RVT_N Location: 658-901 bp Feature: RT Description: RVT_N Location: 658-901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1648-1879 bp Feature: domain Description: GIIM Note: maturase Location: 1648-1879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: GG774705.1 Bacteroides sp. 1_1_14 genomic scaffold supercont1.4, whole genome shotgun sequence (666181 bp)
Overview 1 RT 1: 83872-87065 bp Neighborhood of RT #1 [83872, 87065] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 83872-84216 bp Feature: domain Description: Gp49 Location: 83926-84187 bp Feature: domain Description: Gp4 9 Location: 83926-84 187 bp Feature: gene Location: 84221-84532 bp Feature: domain Description: HTH_XRE Location: 84335-84491 bp Feature: domain Description: HTH_XRE Location: 84 335-84 4 91 bp Feature: gene Location: 84781-86271 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85162-85858 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85162-85858 bp Feature: gene Location: 86340-86822 bp Feature: gene Location: 86829-87065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: GG774727.1 Bacteroides sp. 1_1_14 genomic scaffold supercont1.26, whole genome shotgun sequence (2836 bp)
Overview 1 RT 1: 1-1817 bp Neighborhood of RT #1 [1, 2194] RVT_N RVT-GII GIIM Feature: gene Location: 1-606 bp Feature: gene Location: 542-2194 bp Feature: RT Description: RVT_N Location: 596-839 bp Feature: RT Description: RVT_N Location: 5 96-839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 884-1532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 884-15 32 bp Feature: domain Description: GIIM Note: maturase Location: 1586-1817 bp Feature: domain Description: GIIM Note: maturase Location: 15 86-1817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: GG774710.1 Bacteroides sp. 1_1_14 genomic scaffold supercont1.9, whole genome shotgun sequence (312730 bp)
Overview 1 RT 1: 63964-68288 bp Neighborhood of RT #1 [63964, 68677] DUF1566 Avd_like RVT-DGRs DUF1735 GH18_chitinase-like Feature: gene Location: 63964-64776 bp Feature: domain Description: DUF1566 Location: 64498-64750 bp Feature: domain Description: DUF156 6 Location: 6 4498-6 4750 bp Feature: gene Location: 64922-65302 bp Feature: domain Description: Avd_like Location: 64949-65255 bp Feature: domain Description: Avd_like Location: 6 4949-6 5255 bp Feature: gene Location: 65419-66738 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 65689-66418 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 56 89-6 6 418 bp Feature: gene Location: 66704-66979 bp Feature: gene Location: 67151-68677 bp Feature: domain Description: DUF1735 Location: 67358-67628 bp Feature: domain Description: DUF1735 Location: 6 7358-6 76 28 bp Feature: domain Description: GH18_chitinase-like Location: 67811-68288 bp Feature: domain Description: GH18_chitinase-like Location: 6 7811-6 8288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, DUF1735 (pfam08522), GH18_chitinase-like (cl10447)