myRT

myRT report for GCA_000162555.1_ASM16255v1

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Seq: GG774955.1 Bacteroides sp. 3_1_23 genomic scaffold supercont1.7, whole genome shotgun sequence (1275955 bp)
Overview 1 RT 1: 702138-713659 bp 2 RT 2: 836098-845438 bp Neighborhood of RT #1 [702138, 713775] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #2 [836098, 845821] PRK13351 Spc7 RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 702138-702290 bp Feature: gene Location: 702374-704581 bp Feature: gene Location: 704787-705917 bp Ori: EFI37284.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 705108-705651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7051 08-705651 bp Feature: gene Location: 705919-711876 bp Ori: EFI37285.1 Feature: domain Description: DUF4011 Location: 707149-707662 bp Feature: domain Description: DUF401 1 Location: 7071 49-707662 bp Feature: domain Description: DEXXQc_SF1 Location: 708001-708859 bp Feature: domain Description: DEXXQc_SF1 Location: 708001 -708859 bp Feature: domain Description: DEXXQc_SF1 Location: 709429-710188 bp Feature: domain Description: DEXXQc_SF1 Location: 709429-71 01 88 bp Feature: domain Description: TIGR00376 Location: 710317-710707 bp Feature: domain Description: TIGR00376 Location: 71 031 7-71 0707 bp Feature: domain Description: MTES_1575 Location: 710860-711145 bp Feature: domain Description: MTES_1 575 Location: 71 0860-71 1 1 45 bp Feature: domain Description: DUF3320 Location: 711385-711526 bp Feature: domain Description: DUF3320 Location: 71 1 385-71 1 526 bp Feature: gene Location: 711973-713775 bp Ori: EFI37286.1 Feature: domain Description: rpsA Location: 712042-713659 bp Feature: domain Description: rpsA Location: 71 2042-71 3659 bp Feature: gene Location: 836098-838071 bp Ori: EFI37394.1 Feature: domain Description: PRK13351 Location: 836146-837988 bp Feature: domain Description: PRK1 3351 Location: 8361 46-837988 bp Feature: gene Location: 838680-839645 bp Ori: EFI37395.1 Feature: domain Description: Spc7 Location: 839256-839523 bp Feature: domain Description: Spc7 Location: 839256-839523 bp Feature: gene Location: 839947-841665 bp Ori: EFI37396.1 Feature: domain Description: RVT_N Location: 840052-840295 bp Feature: domain Description: RVT_N Location: 840052-840295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840340-840988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840340-840988 bp Feature: domain Description: GIIM Note: maturase Location: 841042-841273 bp Feature: domain Description: GIIM Note: maturase Location: 841 042-841 273 bp Feature: gene Location: 841757-841912 bp Feature: gene Location: 842273-845821 bp Ori: EFI37398.1 Feature: domain Description: COG4646 Location: 843410-845438 bp Feature: domain Description: COG4646 Location: 84341 0-845438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), PRK13351 (elongation factor G-like protein), Spc7 (smart00787), RVT_N (pfam13655)
RVT-GII, GIIM (pfam08388), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: GG774949.1 Bacteroides sp. 3_1_23 genomic scaffold supercont1.1, whole genome shotgun sequence (3021873 bp)
Overview 1 RT 1: 985739-988661 bp 2 RT 2: 1610440-1615124 bp 3 RT 3: 1655294-1665659 bp Neighborhood of RT #1 [985739, 988661] RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #2 [1610440, 1615124] RVT-UG27 HTH_Hin_like Neighborhood of RT #3 [1655294, 1665659] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 985739-985900 bp Feature: gene Location: 985983-987629 bp Ori: EFI39625.1 Feature: domain Description: RVT_N Location: 986037-986280 bp Feature: domain Description: RVT_N Location: 986037-9862 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986325-986970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98632 5-986970 bp Feature: domain Description: GIIM Note: maturase Location: 987024-987255 bp Feature: domain Description: GIIM Note: maturase Location: 98702 4-9872 55 bp Feature: gene Location: 987773-988231 bp Ori: EFI39626.1 Feature: domain Description: Bac_Flav_CT_G Location: 987776-988214 bp Feature: domain Description: Bac_Flav_CT_G Location: 987776-9882 14 bp Feature: gene Location: 988482-988661 bp Feature: gene Location: 1610440-1611429 bp Feature: gene Location: 1611464-1611922 bp Feature: gene Location: 1612944-1614212 bp Ori: EFI40147.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1613133-1613769 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 1613133-1613769 bp Feature: gene Location: 1614209-1614532 bp Ori: EFI40148.1 Feature: domain Description: HTH_Hin_like Location: 1614260-1614362 bp Feature: domain Description: HTH_Hin_like Location: 16142 60-1614362 bp Feature: gene Location: 1614522-1615124 bp Feature: gene Location: 1655294-1661323 bp Ori: EFI40198.1 Feature: domain Description: DUF1566 Location: 1661009-1661312 bp Feature: domain Description: DUF1566 Location: 1661009-1661312 bp Feature: gene Location: 1661453-1661854 bp Ori: EFI40199.1 Feature: domain Description: Avd_like Location: 1661492-1661831 bp Feature: domain Description: Avd_like Location: 1661492 -1661831 bp Feature: gene Location: 1661867-1663288 bp Ori: EFI40200.1 Feature: domain Description: DUF1566 Location: 1661939-1662083 bp Feature: domain Description: DUF1566 Location: 1661939-1662 083 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1662272-1663013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1662 2 72 -1663013 bp Feature: gene Location: 1663279-1663632 bp Feature: gene Location: 1663695-1665659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), RVT-UG27, HTH_Hin_like (cd00569), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: GG774953.1 Bacteroides sp. 3_1_23 genomic scaffold supercont1.5, whole genome shotgun sequence (178006 bp)
Overview 1 RT 1: 116728-120080 bp Neighborhood of RT #1 [116728, 120556] HU_rel RVT-GII GIIM KOG2036 PHA00447 Feature: gene Location: 116728-117246 bp Ori: EFI38302.1 Feature: domain Description: HU_rel Location: 116776-117100 bp Feature: domain Description: HU_rel Location: 116776-117100 bp Feature: gene Location: 117269-117538 bp Feature: gene Location: 117673-119079 bp Ori: EFI38304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118015-118633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118015-11863 3 bp Feature: domain Description: GIIM Note: maturase Location: 118687-118918 bp Feature: domain Description: GIIM Note: maturase Location: 118687-118918 bp Feature: gene Location: 119255-119605 bp Ori: EFI38305.1 Feature: domain Description: KOG2036 Location: 119294-119510 bp Feature: domain Description: KOG203 6 Location: 119294-119510 bp Feature: gene Location: 119636-120556 bp Ori: EFI38306.1 Feature: domain Description: PHA00447 Location: 119645-120080 bp Feature: domain Description: PHA00447 Location: 119645-120080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_rel (TIGR01201), RVT-GII, GIIM (pfam08388), KOG2036 (KOG2036, Predicted P-loop ATPase fused to an acetyltransferase ), PHA00447 (lysozyme)