myRT

myRT report for GCA_000163655.1_ASM16365v1

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Seq: GG774760.1 Bacteroides sp. 3_1_19 genomic scaffold supercont1.2, whole genome shotgun sequence (1043499 bp)
Overview 1 RT 1: 52985-60351 bp 2 RT 2: 799885-804670 bp Neighborhood of RT #1 [52985, 60356] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4134 Neighborhood of RT #2 [799885, 804738] DUF3987 HTH_17 RVT-Retrons COG3943 Feature: gene Location: 52985-53614 bp Feature: domain Description: DUF4141 Location: 52997-53153 bp Feature: domain Description: DUF41 41 Location: 52997-531 53 bp Feature: gene Location: 53654-54706 bp Feature: gene Location: 54941-56773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55214-56036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5521 4-56036 bp Feature: domain Description: Intron_maturas2 Location: 56210-56453 bp Feature: domain Description: Intron_maturas2 Location: 5621 0-56453 bp Feature: domain Description: HNHc Note: nucleases Location: 56564-56735 bp Feature: domain Description: HNHc Note: nucleases Location: 56564-56735 bp Feature: gene Location: 57333-59729 bp Feature: domain Description: Bac_Flav_CT_G Location: 57336-59718 bp Feature: domain Description: Bac_Flav_CT_G Location: 57336-5971 8 bp Feature: gene Location: 60060-60356 bp Feature: domain Description: DUF4134 Location: 60078-60351 bp Feature: domain Description: DUF41 34 Location: 60078-60351 bp Feature: gene Location: 799885-801261 bp Feature: domain Description: DUF3987 Location: 800035-801055 bp Feature: domain Description: DUF3987 Location: 800035-801 055 bp Feature: gene Location: 801273-801638 bp Feature: domain Description: HTH_17 Location: 801408-801546 bp Feature: domain Description: HTH_1 7 Location: 801 408-801 546 bp Feature: gene Location: 802345-803202 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 802507-803032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 802507-803032 bp Feature: gene Location: 803233-804108 bp Feature: gene Location: 804373-804738 bp Feature: domain Description: COG3943 Location: 804415-804670 bp Feature: domain Description: COG3943 Location: 80441 5-804670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4134 (pfam13572), DUF3987 (pfam13148), HTH_17 (pfam12728), RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: GG774772.1 Bacteroides sp. 3_1_19 genomic scaffold supercont1.14, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 121-1396 bp Neighborhood of RT #1 [121, 1773] RVT_N RVT-GII GIIM Feature: gene Location: 121-1773 bp Feature: RT Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1111 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)