myRT

myRT report for GCA_000163675.1_ASM16367v1

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Seq: GG774799.1 Bacteroides sp. D22 genomic scaffold supercont1.5, whole genome shotgun sequence (273434 bp)
Overview 1 RT 1: 680-5571 bp Neighborhood of RT #1 [680, 5675] RVT_N RVT-GII GIIM MFS_LmrB_MDR_like Feature: gene Location: 680-2347 bp Feature: RT Description: RVT_N Location: 734-977 bp Feature: RT Description: RVT_N Location: 734-977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 022-1 670 bp Feature: domain Description: GIIM Note: maturase Location: 1724-1955 bp Feature: domain Description: GIIM Note: maturase Location: 1 724-1 955 bp Feature: gene Location: 2847-3989 bp Feature: gene Location: 4077-5675 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 4269-5571 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 4269-5571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_LmrB_MDR_like (cd17503), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: GG774800.1 Bacteroides sp. D22 genomic scaffold supercont1.6, whole genome shotgun sequence (258178 bp)
Overview 1 RT 1: 201251-204783 bp Neighborhood of RT #1 [201251, 204783] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 201251-202060 bp Feature: domain Description: DUF1566 Location: 201782-202031 bp Feature: domain Description: DUF1566 Location: 2 01782 -2 02 031 bp Feature: gene Location: 202207-202614 bp Feature: domain Description: Avd_like Location: 202240-202549 bp Feature: domain Description: Avd_like Location: 2 02 2 40-2 02 549 bp Feature: gene Location: 202629-204050 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 203004-203790 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 03004-2 03790 bp Feature: gene Location: 204013-204291 bp Feature: gene Location: 204496-204783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: GG774796.1 Bacteroides sp. D22 genomic scaffold supercont1.2, whole genome shotgun sequence (374564 bp)
Overview 1 RT 1: 254981-259132 bp Neighborhood of RT #1 [254981, 259132] RVT-DGRs Feature: gene Location: 254981-255271 bp Feature: gene Location: 255281-256642 bp Feature: gene Location: 257177-258364 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 257507-258206 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 257507-258206 bp Feature: gene Location: 258327-258755 bp Feature: gene Location: 258752-259132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: GG774811.1 Bacteroides sp. D22 genomic scaffold supercont1.17, whole genome shotgun sequence (160423 bp)
Overview 1 RT 1: 125416-135543 bp Neighborhood of RT #1 [125416, 135543] Glyco_hyd_65N_2 MPTase-PolyVal RVT-GII Intron_maturas2 RVT-GII Intron_maturas2 SSB_OBF SSB_OBF Feature: gene Location: 125416-127887 bp Feature: domain Description: Glyco_hyd_65N_2 Location: 125506-126214 bp Feature: domain Description: Glyco_hyd_65N_2 Location: 125506-126214 bp Feature: gene Location: 127968-129281 bp Feature: domain Description: MPTase-PolyVal Location: 128238-128547 bp Feature: domain Description: MPTase-PolyVal Location: 128238-12854 7 bp Feature: gene Location: 129278-131095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129542-130364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12954 2-130364 bp Feature: domain Description: Intron_maturas2 Location: 130514-130742 bp Feature: domain Description: Intron_maturas2 Location: 130514 -13074 2 bp Feature: gene Location: 132090-133895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132354-133176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132354 -133176 bp Feature: domain Description: Intron_maturas2 Location: 133350-133557 bp Feature: domain Description: Intron_maturas2 Location: 133350-133557 bp Feature: gene Location: 134665-135276 bp Feature: domain Description: SSB_OBF Location: 134683-134893 bp Feature: domain Description: SSB_OBF Location: 134 683-134 893 bp Feature: domain Description: SSB_OBF Location: 134992-135202 bp Feature: domain Description: SSB_OBF Location: 134 992-135202 bp Feature: gene Location: 135358-135543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hyd_65N_2 (pfam14498), MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), SSB_OBF (cd04496)

Seq: GG774825.1 Bacteroides sp. D22 genomic scaffold supercont1.31, whole genome shotgun sequence (73641 bp)
Overview 1 RT 1: 21158-27419 bp Neighborhood of RT #1 [21158, 27532] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 21158-21481 bp Feature: domain Description: DUF4134 Location: 21182-21467 bp Feature: domain Description: DUF4134 Location: 21182-21467 bp Feature: gene Location: 21543-21833 bp Feature: domain Description: DUF4134 Location: 21618-21816 bp Feature: domain Description: DUF4134 Location: 21618-21816 bp Feature: gene Location: 22375-24186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22639-23461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22639-23461 bp Feature: domain Description: Intron_maturas2 Location: 23650-23860 bp Feature: domain Description: Intron_maturas2 Location: 2365 0-23860 bp Feature: domain Description: HNHc Note: nucleases Location: 24010-24115 bp Feature: domain Description: HNHc Note: nucleases Location: 24010-24115 bp Feature: gene Location: 24417-24710 bp Feature: domain Description: DUF4133 Location: 24456-24636 bp Feature: domain Description: DUF4133 Location: 2445 6-24636 bp Feature: gene Location: 24821-27532 bp Feature: domain Description: Bac_Flav_CT_G Location: 24968-26471 bp Feature: domain Description: Bac_Flav_CT_G Location: 24968-26471 bp Feature: domain Description: Bac_Flav_CT_G Location: 26513-27419 bp Feature: domain Description: Bac_Flav_CT_G Location: 265 13-27419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)

Seq: GG774803.1 Bacteroides sp. D22 genomic scaffold supercont1.9, whole genome shotgun sequence (238695 bp)
Overview 1 RT 1: 93454-105861 bp Neighborhood of RT #1 [93454, 105992] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 93454-94290 bp Feature: domain Description: PDDEXK_2 Location: 93475-94153 bp Feature: domain Description: PDDEXK_2 Location: 93475-94153 bp Feature: gene Location: 94459-96666 bp Feature: gene Location: 96874-98004 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97195-97738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97195-97738 bp Feature: gene Location: 98055-104024 bp Feature: domain Description: DUF4011 Location: 99213-99726 bp Feature: domain Description: DUF4011 Location: 99213-99726 bp Feature: domain Description: DEXXQc_SF1 Location: 100065-100494 bp Feature: domain Description: DEXXQc_SF1 Location: 10006 5-100494 bp Feature: domain Description: DEXXQc_SF1 Location: 101493-102252 bp Feature: domain Description: DEXXQc_SF1 Location: 101493-102252 bp Feature: domain Description: KOG1803 Location: 102387-102765 bp Feature: domain Description: KOG1803 Location: 102387-10276 5 bp Feature: domain Description: MTES_1575 Location: 102924-103209 bp Feature: domain Description: MTES_1575 Location: 102924-103209 bp Feature: domain Description: DUF3320 Location: 103539-103674 bp Feature: domain Description: DUF3320 Location: 103539-1036 74 bp Feature: gene Location: 104193-105992 bp Feature: domain Description: rpsA Location: 104262-105861 bp Feature: domain Description: rpsA Location: 10426 2-10586 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784)