myRT

myRT report for GCA_000163875.1_Strep_clav_ATCC27064

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Seq: CM000913.1 Streptomyces clavuligerus ATCC 27064 chromosome, whole genome shotgun sequence (6760392 bp)
Overview 1 RT 1: 567309-571147 bp 2 RT 2: 1887919-1892385 bp 3 RT 3: 3234883-3242852 bp Neighborhood of RT #1 [567309, 571147] pPIWI_RE_X RVT-GII GIIM Neighborhood of RT #2 [1887919, 1893026] APH APH RVT-UG23 Sa_NUDIX HTH_XRE Neighborhood of RT #3 [3234883, 3242852] CRISPR_Cse1 PRK09694 Cas3_C RVT-UNC AbiEii AbiEii Feature: gene Location: 567309-567839 bp Ori: EFG05490.1 Feature: domain Description: pPIWI_RE_X Location: 567321-567753 bp Feature: domain Description: pPIWI_RE_X Location: 567321 -567753 bp Feature: gene Location: 567749-568465 bp Feature: gene Location: 568764-570029 bp Ori: EFG05492.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568920-569604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568920-569604 bp Feature: domain Description: GIIM Note: maturase Location: 569673-569907 bp Feature: domain Description: GIIM Note: maturase Location: 569673-569907 bp Feature: gene Location: 570236-570526 bp Feature: gene Location: 570770-571147 bp Feature: gene Location: 1887919-1888716 bp Ori: EFG06662.1 Feature: domain Description: APH Location: 1888054-1888360 bp Feature: domain Description: APH Location: 1 888054-1 888360 bp Feature: domain Description: APH Location: 1888396-1888594 bp Feature: domain Description: APH Location: 1 888396-1 888594 bp Feature: gene Location: 1888921-1889136 bp Feature: gene Location: 1889559-1891004 bp Ori: EFG06664.1 Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 1889724-1890318 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 1 889724-1 89031 8 bp Feature: gene Location: 1891100-1891807 bp Ori: EFG06665.1 Feature: domain Description: Sa_NUDIX Location: 1891214-1891805 bp Feature: domain Description: Sa_NUDIX Location: 1 891 21 4-1 891 805 bp Feature: gene Location: 1892127-1893026 bp Ori: EFG06666.1 Feature: domain Description: HTH_XRE Location: 1892226-1892385 bp Feature: domain Description: HTH_XRE Location: 1 892226-1 892385 bp Feature: gene Location: 3234883-3236817 bp Ori: EFG07813.1 Feature: domain Description: CRISPR_Cse1 Location: 3234889-3236425 bp Feature: domain Description: CRISPR_Cse1 Location: 3234889-3236425 bp Feature: gene Location: 3236808-3239858 bp Ori: EFG07814.1 Feature: domain Description: PRK09694 Location: 3236859-3238947 bp Feature: domain Description: PRK09694 Location: 3236859-3238947 bp Feature: domain Description: Cas3_C Location: 3239340-3239646 bp Feature: domain Description: Cas3_C Location: 3239340-3239646 bp Feature: gene Location: 3239932-3241203 bp Ori: EFG07815.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 3240202-3240649 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3240202-3240649 bp Feature: gene Location: 3241232-3242245 bp Ori: EFG07816.1 Feature: domain Description: AbiEii Location: 3241322-3241424 bp Feature: domain Description: AbiEii Location: 3241 322-3241 424 bp Feature: domain Description: AbiEii Location: 3241751-3241985 bp Feature: domain Description: AbiEii Location: 3241 751 -3241 985 bp Feature: gene Location: 3242232-3242852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pPIWI_RE_X, RVT-GII, GIIM (pfam08388), APH (pfam01636), RVT-UG23, Sa_NUDIX (pfam18167), HTH_XRE (smart00530), CRISPR_Cse1 (pfam09481), PRK09694 (CRISPR-associated helicase/endonuclease Cas3), Cas3_C (pfam18395)
RVT-UNC/RVT-UG23/RVT-GII/RVT-CRISPR(RVT-UNC), AbiEii (pfam08843)