myRT

myRT report for GCA_000164315.1_ASM16431v1

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Seq: GG772393.1 Escherichia coli MS 69-1 genomic scaffold Scfld190, whole genome shotgun sequence (12628 bp)
Overview 1 RT 1: 225-2413 bp Neighborhood of RT #1 [225, 2413] RVT-GII GIIM Feature: gene Location: 225-1733 bp Ori: EFJ81891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1 21 5 bp Feature: domain Description: GIIM Note: maturase Location: 1290-1488 bp Feature: domain Description: GIIM Note: maturase Location: 1 290-1 488 bp Feature: gene Location: 1702-2127 bp Feature: gene Location: 2018-2413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: GG772415.1 Escherichia coli MS 69-1 genomic scaffold Scfld353, whole genome shotgun sequence (281627 bp)
Overview 1 RT 1: 30086-35282 bp Neighborhood of RT #1 [30086, 35287] RVT-Retrons Q Feature: gene Location: 30086-31825 bp Feature: gene Location: 31878-32015 bp Feature: gene Location: 32295-33521 bp Ori: EFJ80836.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32481-33063 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 481-33063 bp Feature: gene Location: 33518-34225 bp Feature: gene Location: 34268-35287 bp Ori: EFJ80838.1 Feature: domain Description: Q Location: 34271-35282 bp Feature: domain Description: Q Location: 342 71-352 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536)

Seq: GG772343.1 Escherichia coli MS 69-1 genomic scaffold Scfld49, whole genome shotgun sequence (18040 bp)
Overview 1 RT 1: 2277-6277 bp Neighborhood of RT #1 [2277, 6285] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2277-3638 bp Ori: EFJ83445.1 Feature: domain Description: DcuC Location: 2280-3612 bp Feature: domain Description: DcuC Location: 2280-3 612 bp Feature: gene Location: 3691-3918 bp Feature: gene Location: 4284-4730 bp Ori: EFJ83447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4590-4692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4590-4692 bp Feature: gene Location: 4778-4927 bp Feature: gene Location: 5254-6285 bp Ori: EFJ83449.1 Feature: domain Description: Asparaginase_2 Location: 5344-6277 bp Feature: domain Description: Asparaginase_2 Location: 53 44-6277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: GG772377.1 Escherichia coli MS 69-1 genomic scaffold Scfld146, whole genome shotgun sequence (139858 bp)
Overview 1 RT 1: 85268-91299 bp Neighborhood of RT #1 [85268, 91299] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 85268-86188 bp Ori: EFJ82507.1 Feature: domain Description: AbiEii Location: 85310-86051 bp Feature: domain Description: AbiEii Location: 85310-86051 bp Feature: gene Location: 86175-86978 bp Ori: EFJ82508.1 Feature: domain Description: AbiEi_3_N Location: 86208-86469 bp Feature: domain Description: AbiEi_3_N Location: 86208-864 69 bp Feature: domain Description: AbiEi_3 Location: 86481-86937 bp Feature: domain Description: AbiEi_3 Location: 864 81-86937 bp Feature: gene Location: 87273-90482 bp Ori: EFJ82509.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 87801-88290 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 87801-88290 bp Feature: domain Description: nitrilase Location: 89796-90393 bp Feature: domain Description: nitrilase Location: 89796-90393 bp Feature: gene Location: 90643-90783 bp Ori: EFJ82510.1 Feature: domain Description: Phage_ASH Location: 90670-90763 bp Feature: domain Description: Phage_ASH Location: 90670-90763 bp Feature: gene Location: 90829-91299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)