myRT

myRT report for GCA_000164355.1_ASM16435v1

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Seq: GG772646.1 Escherichia coli MS 21-1 genomic scaffold Scfld239, whole genome shotgun sequence (135986 bp)
Overview 1 RT 1: 123284-127656 bp Neighborhood of RT #1 [123284, 127664] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 123284-124189 bp Feature: gene Location: 124163-124450 bp Feature: gene Location: 124764-125303 bp Ori: EFK22344.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125094-125172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25094-1 251 72 bp Feature: gene Location: 125331-125852 bp Ori: EFK22345.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125337-125619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25337-1 2561 9 bp Feature: domain Description: GIIM Note: maturase Location: 125667-125847 bp Feature: domain Description: GIIM Note: maturase Location: 1 25667-1 25847 bp Feature: gene Location: 126056-126367 bp Feature: gene Location: 126402-127664 bp Ori: EFK22347.1 Feature: domain Description: YesM Location: 126915-127656 bp Feature: domain Description: YesM Location: 1 2691 5-1 27656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: GG772593.1 Escherichia coli MS 21-1 genomic scaffold Scfld18, whole genome shotgun sequence (2503 bp)
Overview 1 RT 1: 93-2281 bp Neighborhood of RT #1 [93, 2281] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: EFK23243.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1886-2281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: GG772786.1 Escherichia coli MS 21-1 genomic scaffold Scfld1043, whole genome shotgun sequence (168409 bp)
Overview 1 RT 1: 25167-29575 bp Neighborhood of RT #1 [25167, 29575] TraD PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 25167-25478 bp Ori: EFK17780.1 Feature: domain Description: TraD Location: 25281-25455 bp Feature: domain Description: TraD Location: 25281-25455 bp Feature: gene Location: 26316-27818 bp Ori: EFK17781.1 Feature: domain Description: PRK13889 Location: 26319-26898 bp Feature: domain Description: PRK13 889 Location: 263 19-26898 bp Feature: gene Location: 27895-28995 bp Ori: EFK17782.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28036-28588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2803 6-28588 bp Feature: gene Location: 28988-29269 bp Ori: EFK17783.1 Feature: domain Description: HTH_XRE Location: 29003-29168 bp Feature: domain Description: HTH_XRE Location: 29003 -29168 bp Feature: gene Location: 29360-29575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: GG772741.1 Escherichia coli MS 21-1 genomic scaffold Scfld688, whole genome shotgun sequence (8078 bp)
Overview 1 RT 1: 3486-4966 bp Neighborhood of RT #1 [3486, 4977] RVT-GII InsE Feature: gene Location: 3486-3605 bp Feature: gene Location: 3779-4120 bp Feature: gene Location: 4293-4562 bp Ori: EFK19400.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4398-4488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 398-4 4 88 bp Feature: gene Location: 4532-4741 bp Feature: gene Location: 4768-4977 bp Ori: EFK19402.1 Feature: domain Description: InsE Location: 4780-4966 bp Feature: domain Description: InsE Location: 4 780-4 966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)