myRT

myRT report for GCA_000164515.1_ASM16451v1

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Seq: GG773662.1 Escherichia coli MS 175-1 genomic scaffold Scfld269, whole genome shotgun sequence (12664 bp)
Overview 1 RT 1: 283-8537 bp Neighborhood of RT #1 [283, 8932] RVT-GII RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Feature: gene Location: 283-678 bp Feature: gene Location: 569-994 bp Feature: gene Location: 963-1343 bp Ori: EFJ66903.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 221 -1 296 bp Feature: gene Location: 1340-2425 bp Ori: EFJ66905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373-1907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 373-1 907 bp Feature: domain Description: GIIM Note: maturase Location: 1982-2180 bp Feature: domain Description: GIIM Note: maturase Location: 1 982-21 80 bp Feature: gene Location: 2548-2964 bp Ori: EFJ66906.1 Feature: domain Description: PHA02517 Location: 2551-2956 bp Feature: domain Description: PHA0251 7 Location: 2551 -2956 bp Feature: gene Location: 3185-8932 bp Ori: EFJ66907.1 Feature: domain Description: DUF4011 Location: 3287-4121 bp Feature: domain Description: DUF401 1 Location: 3287-41 21 bp Feature: domain Description: DEXXQc_SF1 Location: 4478-7580 bp Feature: domain Description: DEXXQc_SF1 Location: 4478-7580 bp Feature: domain Description: SF1_C_Upf1 Location: 7589-8117 bp Feature: domain Description: SF1 _C_Upf1 Location: 7589-81 1 7 bp Feature: domain Description: MTES_1575 Location: 8246-8537 bp Feature: domain Description: MTES_1 575 Location: 8246-8537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)

Seq: GG773691.1 Escherichia coli MS 175-1 genomic scaffold Scfld481, whole genome shotgun sequence (56600 bp)
Overview 1 RT 1: 217-3955 bp Neighborhood of RT #1 [217, 3955] PRK09692 Arm-DNA-bind_3 RVT-Retrons Feature: gene Location: 217-768 bp Ori: EFJ65897.1 Feature: domain Description: PRK09692 Location: 223-766 bp Feature: domain Description: PRK09692 Location: 2 2 3-766 bp Feature: gene Location: 828-1130 bp Ori: EFJ65898.1 Feature: domain Description: Arm-DNA-bind_3 Location: 837-1089 bp Feature: domain Description: Arm-DNA-bind_3 Location: 837-1089 bp Feature: gene Location: 1585-2517 bp Ori: EFJ65899.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1687-2281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1687-2 2 81 bp Feature: gene Location: 2519-3487 bp Feature: gene Location: 3806-3955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), Arm-DNA-bind_3 (pfam13356), RVT-Retrons