myRT

myRT report for GCA_000164925.2_ASM16492v1

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Seq: ADUT01000013.1 Shigella dysenteriae 1617 gss1617.assembly.21, whole genome shotgun sequence (253027 bp)
Overview 1 RT 1: 167206-171074 bp Neighborhood of RT #1 [167206, 171079] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 167206-167922 bp Ori: EFP73354.1 Gene: rph Feature: domain Description: rph Location: 167209-167917 bp Feature: domain Description: rph Location: 1 67209-1 6791 7 bp Feature: gene Location: 167988-168629 bp Ori: EFP73355.1 Gene: pyrE Feature: domain Description: pyrE Location: 167991-168624 bp Feature: domain Description: pyrE Location: 1 67991 -1 68624 bp Feature: gene Location: 169083-169592 bp Ori: EFP73356.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169089-169584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 69089-1 69584 bp Feature: gene Location: 169921-170517 bp Ori: EFP73357.1 Feature: domain Description: slmA Location: 169927-170503 bp Feature: domain Description: slmA Location: 1 69927-1 70503 bp Feature: gene Location: 170624-171079 bp Ori: EFP73358.1 Gene: dut Feature: domain Description: dut Location: 170627-171074 bp Feature: domain Description: dut Location: 1 70627-1 71 074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: ADUT01000004.1 Shigella dysenteriae 1617 gss1617.assembly.13, whole genome shotgun sequence (41881 bp)
Overview 1 RT 1: 21299-25326 bp Neighborhood of RT #1 [21299, 25337] PRK08943 HTH_23 InsE RVT-GII RVT-GII DDE_Tnp_1 PHA02517 Feature: gene Location: 21299-22243 bp Ori: EFP73888.1 Gene: msbB Feature: domain Description: PRK08943 Location: 21302-22238 bp Feature: domain Description: PRK08943 Location: 2 1302 -2 2 2 38 bp Feature: gene Location: 22417-23085 bp Ori: EFP73889.1 Feature: domain Description: HTH_23 Location: 22525-22612 bp Feature: domain Description: HTH_2 3 Location: 2 2 52 5-2 2 612 bp Feature: domain Description: InsE Location: 22744-22936 bp Feature: domain Description: InsE Location: 2 2 744-2 2 936 bp Feature: gene Location: 23227-23493 bp Ori: EFP73890.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23230-23485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 30-2 3485 bp Feature: gene Location: 23596-23799 bp Ori: EFP73891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23704-23794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3704-2 3794 bp Feature: gene Location: 23891-24583 bp Ori: EFP73892.1 Feature: domain Description: DDE_Tnp_1 Location: 23897-24539 bp Feature: domain Description: DDE_Tnp_1 Location: 2 3897-2 4539 bp Feature: gene Location: 24624-25337 bp Ori: EFP73893.1 Feature: domain Description: PHA02517 Location: 24642-25326 bp Feature: domain Description: PHA02 517 Location: 2 4642 -2 532 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed)

Seq: ADUT01000015.1 Shigella dysenteriae 1617 gss1617.assembly.23, whole genome shotgun sequence (10946 bp)
Overview 1 RT 1: 1173-3962 bp Neighborhood of RT #1 [1173, 3976] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1173-1295 bp Ori: EFP73036.1 Feature: domain Description: PHA02517 Location: 1176-1281 bp Feature: domain Description: PHA02517 Location: 1176-1281 bp Feature: gene Location: 1371-1508 bp Ori: EFP73037.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1383-1482 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13 83 -1482 bp Feature: gene Location: 2075-3202 bp Ori: EFP73038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2825 bp Feature: domain Description: GIIM Note: maturase Location: 2903-3125 bp Feature: domain Description: GIIM Note: maturase Location: 2903 -3 125 bp Feature: gene Location: 3318-3464 bp Ori: EFP73039.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 3330-3441 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 3 3 0-3 441 bp Feature: gene Location: 3491-3976 bp Ori: EFP73040.1 Feature: domain Description: COG3547 Location: 3509-3962 bp Feature: domain Description: COG3 547 Location: 3 509-3 962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )