myRT

myRT report for GCA_000165885.1_ASM16588v1

Download annotations/find similar RTs

Seq: GL531753.1 Lactobacillus crispatus CTV-05 genomic scaffold supercont1.18, whole genome shotgun sequence (12624 bp)
Overview 1 RT 1: 1-6271 bp Neighborhood of RT #1 [1, 6297] HTH_26 RVT-GII GIIM YdhF PRK15064 Feature: gene Location: 1-839 bp Feature: gene Location: 836-1639 bp Feature: domain Description: HTH_26 Location: 1283-1379 bp Feature: domain Description: HTH_26 Location: 1 283-1 379 bp Feature: gene Location: 1758-3056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 959-2577 bp Feature: domain Description: GIIM Note: maturase Location: 2634-2841 bp Feature: domain Description: GIIM Note: maturase Location: 2634-2841 bp Feature: gene Location: 3667-4587 bp Feature: domain Description: YdhF Location: 3670-4585 bp Feature: domain Description: YdhF Location: 3670-4585 bp Feature: gene Location: 4675-6297 bp Feature: domain Description: PRK15064 Location: 4681-6271 bp Feature: domain Description: PRK1 5064 Location: 4681 -6271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK15064 (ABC transporter ATP-binding protein; Provisional), HTH_26 (pfam13443)

Seq: GL531737.1 Lactobacillus crispatus CTV-05 genomic scaffold supercont1.2, whole genome shotgun sequence (417359 bp)
Overview 1 RT 1: 23408-28378 bp 2 RT 2: 52947-60198 bp Neighborhood of RT #1 [23408, 28401] ECF_trnsprt PRK05439 RVT-GII GIIM OsmC PBP2_Lactococcal_OppA_like Neighborhood of RT #2 [52947, 60203] DDE_5 InsG LPXTG_anchor RVT-GII GIIM COG3666 DDE_Tnp_1 ribH Feature: gene Location: 23408-24022 bp Feature: domain Description: ECF_trnsprt Location: 23438-23990 bp Feature: domain Description: ECF_trnsprt Location: 2 3438-2 3990 bp Feature: gene Location: 24026-24940 bp Feature: domain Description: PRK05439 Location: 24032-24935 bp Feature: domain Description: PRK05439 Location: 2 4032 -2 4935 bp Feature: gene Location: 25546-26844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25747-26365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5747-2 6365 bp Feature: domain Description: GIIM Note: maturase Location: 26422-26629 bp Feature: domain Description: GIIM Note: maturase Location: 2 642 2 -2 662 9 bp Feature: gene Location: 27023-27436 bp Feature: domain Description: OsmC Location: 27137-27428 bp Feature: domain Description: OsmC Location: 2 7137-2 742 8 bp Feature: gene Location: 28051-28401 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 28234-28378 bp Feature: domain Description: PBP2 _Lactococcal_OppA_like Location: 2 82 34-2 8378 bp Feature: gene Location: 52947-54296 bp Feature: domain Description: DDE_5 Location: 53145-53712 bp Feature: domain Description: DDE_5 Location: 53145-53712 bp Feature: domain Description: InsG Location: 53733-54006 bp Feature: domain Description: InsG Location: 53733-54006 bp Feature: gene Location: 54336-54950 bp Feature: domain Description: LPXTG_anchor Location: 54846-54948 bp Feature: domain Description: LPXTG_anchor Location: 54846-54948 bp Feature: gene Location: 55560-56858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55761-56379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55761-56379 bp Feature: domain Description: GIIM Note: maturase Location: 56436-56643 bp Feature: domain Description: GIIM Note: maturase Location: 56436-56643 bp Feature: gene Location: 58043-59737 bp Feature: domain Description: COG3666 Location: 58085-58520 bp Feature: domain Description: COG3666 Location: 58085-5852 0 bp Feature: domain Description: DDE_Tnp_1 Location: 58835-59588 bp Feature: domain Description: DDE_Tnp_1 Location: 58835-59588 bp Feature: gene Location: 59739-60203 bp Feature: domain Description: ribH Location: 59742-60198 bp Feature: domain Description: ribH Location: 59742 -60198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ECF_trnsprt (pfam12822), PRK05439 (pantothenate kinase; Provisional), RVT-GII, GIIM (pfam08388), OsmC (pfam02566), PBP2_Lactococcal_OppA_like (cd08510), DDE_5 (pfam13546), InsG (COG3385), LPXTG_anchor (TIGR01167), COG3666 (Transposase )
DDE_Tnp_1 (pfam01609), ribH (PRK00061)

Seq: GL531746.1 Lactobacillus crispatus CTV-05 genomic scaffold supercont1.11, whole genome shotgun sequence (68130 bp)
Overview 1 RT 1: 55880-60784 bp Neighborhood of RT #1 [55880, 60852] GlpF RVT-GII GIIM PRK01237 Acyl_transf_3 Feature: gene Location: 55880-56632 bp Feature: domain Description: GlpF Location: 55889-56621 bp Feature: domain Description: GlpF Location: 55889-56621 bp Feature: gene Location: 56691-56813 bp Feature: gene Location: 56915-58213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57116-57734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57116-5773 4 bp Feature: domain Description: GIIM Note: maturase Location: 57791-57998 bp Feature: domain Description: GIIM Note: maturase Location: 57791-57998 bp Feature: gene Location: 58810-59628 bp Feature: domain Description: PRK01237 Location: 58816-59617 bp Feature: domain Description: PRK0123 7 Location: 58816-59617 bp Feature: gene Location: 59734-60852 bp Feature: domain Description: Acyl_transf_3 Location: 59782-60784 bp Feature: domain Description: Acyl_transf_3 Location: 59782-60784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlpF (COG0580), RVT-GII, GIIM (pfam08388), PRK01237 (triphosphoribosyl-dephospho-CoA synthase; Validated), Acyl_transf_3 (pfam01757)

Seq: GL531739.1 Lactobacillus crispatus CTV-05 genomic scaffold supercont1.4, whole genome shotgun sequence (179853 bp)
Overview 1 RT 1: 30812-33702 bp Neighborhood of RT #1 [30812, 33917] Peptidase_M78 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII GIIM Feature: gene Location: 30812-31225 bp Feature: domain Description: Peptidase_M78 Location: 30863-31199 bp Feature: domain Description: Peptidase_M78 Location: 30863-31199 bp Feature: gene Location: 31376-32488 bp Feature: domain Description: Arm-DNA-bind_4 Location: 31406-31532 bp Feature: domain Description: Arm-DNA-bind_4 Location: 314 06-31532 bp Feature: domain Description: Phage_int_SAM_3 Location: 31559-31718 bp Feature: domain Description: Phage_int_SAM_3 Location: 31559-31718 bp Feature: domain Description: INT_ICEBs1_C_like Location: 31892-32423 bp Feature: domain Description: INT_ICEBs1_C_like Location: 31892-324 23 bp Feature: gene Location: 32619-33917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32820-33438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32820-334 38 bp Feature: domain Description: GIIM Note: maturase Location: 33495-33702 bp Feature: domain Description: GIIM Note: maturase Location: 334 95-33702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M78 (pfam06114), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388)