myRT

myRT report for GCA_000166195.3_ASM16619v3

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Seq: CM001403.1 Mucilaginibacter paludis DSM 18603 chromosome, whole genome shotgun sequence (8408322 bp)
Overview 1 RT 1: 1505681-1510855 bp 2 RT 2: 2271345-2275800 bp 3 RT 3: 3337455-3345416 bp 4 RT 4: 3515531-3521606 bp 5 RT 5: 5820067-5826129 bp 6 RT 6: 5910285-5919762 bp Neighborhood of RT #1 [1505681, 1510860] PyrR RVT-GII RVT-GII GIIM PRK13949 DppB DppB Neighborhood of RT #2 [2271345, 2275817] SnoaL_2 NTP-PPase_u6 RVT-GII GIIM PRK06182 SRPBCC_4 Neighborhood of RT #3 [3337455, 3345433] BadF lnt RVT-GII GIIM RsmI PRK05431 Neighborhood of RT #4 [3515531, 3521614] PRK05298 Ppnp RVT-GII GIIM Ada_Zn_binding COG3826 Neighborhood of RT #5 [5820067, 5826146] HTH_MARR DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM Zip KOG2694 PAP2_like_4 Neighborhood of RT #6 [5910285, 5919762] GalA GH36 Melibiase_C RVT-UG2 Feature: gene Location: 1505681-1506073 bp Feature: gene Location: 1506137-1506646 bp Ori: EHQ25429.1 Feature: domain Description: PyrR Location: 1506152-1506641 bp Feature: domain Description: PyrR Location: 1 5061 52-1 506641 bp Feature: gene Location: 1507580-1508302 bp Ori: EHQ25430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1507937-1508288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 507937-1 508288 bp Feature: gene Location: 1508304-1508948 bp Ori: EHQ25430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508310-1508580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50831 0-1 508580 bp Feature: domain Description: GIIM Note: maturase Location: 1508661-1508871 bp Feature: domain Description: GIIM Note: maturase Location: 1 508661 -1 508871 bp Feature: gene Location: 1509217-1509762 bp Ori: EHQ25431.1 Feature: domain Description: PRK13949 Location: 1509271-1509748 bp Feature: domain Description: PRK1 3949 Location: 1 509271 -1 509748 bp Feature: gene Location: 1509805-1510860 bp Ori: EHQ25432.1 Feature: domain Description: DppB Location: 1509808-1510021 bp Feature: domain Description: DppB Location: 1 509808-1 51 0021 bp Feature: domain Description: DppB Location: 1510063-1510855 bp Feature: domain Description: DppB Location: 1 51 0063-1 51 0855 bp Feature: gene Location: 2271345-2271674 bp Ori: EHQ26028.1 Feature: domain Description: SnoaL_2 Location: 2271366-2271621 bp Feature: domain Description: SnoaL_2 Location: 2271 366-2271 621 bp Feature: gene Location: 2271679-2272002 bp Ori: EHQ26029.1 Feature: domain Description: NTP-PPase_u6 Location: 2271712-2271979 bp Feature: domain Description: NTP-PPase_u6 Location: 2271 71 2-2271 979 bp Feature: gene Location: 2272211-2273665 bp Ori: EHQ26030.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2272547-2273171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2272547-22731 71 bp Feature: domain Description: GIIM Note: maturase Location: 2273225-2273441 bp Feature: domain Description: GIIM Note: maturase Location: 2273225-2273441 bp Feature: gene Location: 2274559-2275377 bp Ori: EHQ26031.1 Feature: domain Description: PRK06182 Location: 2274565-2275372 bp Feature: domain Description: PRK061 82 Location: 2274565-2275372 bp Feature: gene Location: 2275389-2275817 bp Ori: EHQ26032.1 Feature: domain Description: SRPBCC_4 Location: 2275401-2275800 bp Feature: domain Description: SRPBCC_4 Location: 2275401 -2275800 bp Feature: gene Location: 3337455-3338312 bp Ori: EHQ26953.1 Feature: domain Description: BadF Location: 3337458-3338109 bp Feature: domain Description: BadF Location: 3337458-33381 09 bp Feature: gene Location: 3338314-3339966 bp Ori: EHQ26954.1 Feature: domain Description: lnt Location: 3338326-3339916 bp Feature: domain Description: lnt Location: 3338326-333991 6 bp Feature: gene Location: 3340631-3341995 bp Ori: EHQ26955.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3340985-3341627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3340985-3341 627 bp Feature: domain Description: GIIM Note: maturase Location: 3341708-3341918 bp Feature: domain Description: GIIM Note: maturase Location: 3341 708-3341 91 8 bp Feature: gene Location: 3343206-3343931 bp Ori: EHQ26956.1 Feature: domain Description: RsmI Location: 3343209-3343899 bp Feature: domain Description: RsmI Location: 3343209-3343899 bp Feature: gene Location: 3344162-3345433 bp Ori: EHQ26957.1 Feature: domain Description: PRK05431 Location: 3344165-3345416 bp Feature: domain Description: PRK05431 Location: 33441 65-334541 6 bp Feature: gene Location: 3515531-3517558 bp Ori: EHQ27118.1 Feature: domain Description: PRK05298 Location: 3515537-3517547 bp Feature: domain Description: PRK05298 Location: 351 5537-351 7547 bp Feature: gene Location: 3517807-3518106 bp Ori: EHQ27119.1 Feature: domain Description: Ppnp Location: 3517837-3518101 bp Feature: domain Description: Ppnp Location: 351 7837-351 81 01 bp Feature: gene Location: 3518413-3519777 bp Ori: EHQ27120.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3518767-3519409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 8767-351 9409 bp Feature: domain Description: GIIM Note: maturase Location: 3519490-3519700 bp Feature: domain Description: GIIM Note: maturase Location: 351 9490-351 9700 bp Feature: gene Location: 3520639-3520899 bp Ori: EHQ27121.1 Feature: domain Description: Ada_Zn_binding Location: 3520732-3520861 bp Feature: domain Description: Ada_Zn_binding Location: 3520732-3520861 bp Feature: gene Location: 3520901-3521614 bp Ori: EHQ27122.1 Feature: domain Description: COG3826 Location: 3520925-3521606 bp Feature: domain Description: COG3826 Location: 3520925-3521 606 bp Feature: gene Location: 5820067-5820516 bp Ori: EHQ29031.1 Feature: domain Description: HTH_MARR Location: 5820181-5820475 bp Feature: domain Description: HTH_MARR Location: 58201 81 -5820475 bp Feature: gene Location: 5821280-5822344 bp Ori: EHQ29032.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 5821328-5821760 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 5821 328-5821 760 bp Feature: domain Description: Transposase_20 Location: 5821970-5822210 bp Feature: domain Description: Transposase_20 Location: 5821 970-582221 0 bp Feature: gene Location: 5822664-5824028 bp Ori: EHQ29033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5823018-5823660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582301 8-5823660 bp Feature: domain Description: GIIM Note: maturase Location: 5823741-5823951 bp Feature: domain Description: GIIM Note: maturase Location: 5823741 -5823951 bp Feature: gene Location: 5824862-5825581 bp Ori: EHQ29034.1 Feature: domain Description: Zip Location: 5824883-5825138 bp Feature: domain Description: Zip Location: 5824883-58251 38 bp Feature: domain Description: KOG2694 Location: 5825243-5825552 bp Feature: domain Description: KOG2694 Location: 5825243-5825552 bp Feature: gene Location: 5825583-5826146 bp Ori: EHQ29035.1 Feature: domain Description: PAP2_like_4 Location: 5825598-5826129 bp Feature: domain Description: PAP2_like_4 Location: 5825598-58261 29 bp Feature: gene Location: 5910285-5912471 bp Ori: EHQ29098.1 Feature: domain Description: GalA Location: 5910375-5912337 bp Feature: domain Description: GalA Location: 591 0375-591 2337 bp Feature: gene Location: 5912503-5914542 bp Ori: EHQ29099.1 Feature: domain Description: GH36 Location: 5913352-5914186 bp Feature: domain Description: GH36 Location: 591 3352-591 41 86 bp Feature: domain Description: Melibiase_C Location: 5914333-5914519 bp Feature: domain Description: Melibiase_C Location: 591 4333-591 451 9 bp Feature: gene Location: 5916033-5917583 bp Ori: EHQ29100.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5916276-5917185 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 591 6276-591 71 85 bp Feature: gene Location: 5918646-5919089 bp Feature: gene Location: 5919484-5919762 bp Sorry, your browser does not 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Associated domains:myRT PyrR (COG2065), RVT-GII, GIIM (pfam08388), PRK13949 (shikimate kinase; Provisional), DppB (COG0601), SnoaL_2 (pfam12680), NTP-PPase_u6 (cd11543), PRK06182 (short chain dehydrogenase; Validated), SRPBCC_4 (cd07822), BadF (COG2971)
lnt (TIGR00546), RsmI (COG0313), PRK05431 (seryl-tRNA synthetase; Provisional), PRK05298 (excinuclease ABC subunit UvrB), Ppnp, Ada_Zn_binding (pfam02805), COG3826 (Uncharacterized protein ), HTH_MARR (smart00347), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)
Zip (pfam02535), KOG2694 (KOG2694, Putative zinc transporter ), PAP2_like_4 (cd03395), GalA (COG3345), GH36 (cd14791), Melibiase_C (pfam17801), RVT-UG2