myRT

myRT report for GCA_000166535.3_ASM16653v3

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Seq: CM007915.1 Escherichia coli TW10598 chromosome, complete sequence, whole genome shotgun sequence (4870513 bp)
Overview 1 RT 1: 2076773-2085445 bp 2 RT 2: 3268010-3272358 bp 3 RT 3: 4063776-4067418 bp Neighborhood of RT #1 [2076773, 2085840] InsE PHA02517 RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #2 [3268010, 3272375] DDE_Tnp_1_5 PHA02517 RVT-GII GIIM PHA02517 PRK09413 Neighborhood of RT #3 [4063776, 4067420] PRK08178 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 2076773-2077099 bp Feature: domain Description: InsE Location: 2076785-2077049 bp Feature: domain Description: InsE Location: 2076785-2077049 bp Feature: gene Location: 2077105-2077524 bp Feature: domain Description: PHA02517 Location: 2077120-2077459 bp Feature: domain Description: PHA0251 7 Location: 20771 20-2077459 bp Feature: gene Location: 2078116-2079639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2078389-2079121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2078389-20791 21 bp Feature: domain Description: GIIM Note: maturase Location: 2079196-2079394 bp Feature: domain Description: GIIM Note: maturase Location: 20791 96-2079394 bp Feature: gene Location: 2079762-2080178 bp Feature: domain Description: PHA02517 Location: 2079765-2080170 bp Feature: domain Description: PHA0251 7 Location: 2079765-20801 70 bp Feature: gene Location: 2080399-2085840 bp Feature: domain Description: DUF4011 Location: 2080696-2081029 bp Feature: domain Description: DUF401 1 Location: 2080696-2081 029 bp Feature: domain Description: DEXXQc_SF1 Location: 2081386-2084488 bp Feature: domain Description: DEXXQc_SF1 Location: 2081 386-2084488 bp Feature: domain Description: SF1_C_Upf1 Location: 2084497-2085025 bp Feature: domain Description: SF1 _C_Upf1 Location: 2084497-2085025 bp Feature: domain Description: MTES_1575 Location: 2085154-2085445 bp Feature: domain Description: MTES_1 575 Location: 20851 54-2085445 bp Feature: gene Location: 3268010-3268933 bp Feature: domain Description: DDE_Tnp_1_5 Location: 3268067-3268400 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 3268067-3268400 bp Feature: gene Location: 3269085-3269477 bp Feature: domain Description: PHA02517 Location: 3269121-3269412 bp Feature: domain Description: PHA0251 7 Location: 32691 21 -326941 2 bp Feature: gene Location: 3270069-3271592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270342-3271074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270342-3271 074 bp Feature: domain Description: GIIM Note: maturase Location: 3271149-3271347 bp Feature: domain Description: GIIM Note: maturase Location: 3271 1 49-3271 347 bp Feature: gene Location: 3271769-3272149 bp Feature: domain Description: PHA02517 Location: 3271772-3272141 bp Feature: domain Description: PHA0251 7 Location: 3271 772-32721 41 bp Feature: gene Location: 3272151-3272375 bp Feature: domain Description: PRK09413 Location: 3272166-3272358 bp Feature: domain Description: PRK0941 3 Location: 32721 66-3272358 bp Feature: gene Location: 4063776-4063889 bp Feature: domain Description: PRK08178 Location: 4063785-4063887 bp Feature: domain Description: PRK081 78 Location: 4063785-4063887 bp Feature: gene Location: 4063937-4064383 bp Feature: domain Description: PHA02517 Location: 4063940-4064381 bp Feature: domain Description: PHA0251 7 Location: 4063940-4064381 bp Feature: gene Location: 4064500-4066023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4064773-4065505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4064773-4065505 bp Feature: domain Description: GIIM Note: maturase Location: 4065580-4065778 bp Feature: domain Description: GIIM Note: maturase Location: 4065580-4065778 bp Feature: gene Location: 4066615-4067097 bp Feature: domain Description: PHA02517 Location: 4066678-4067032 bp Feature: domain Description: PHA0251 7 Location: 4066678-4067032 bp Feature: gene Location: 4067094-4067420 bp Feature: domain Description: InsE Location: 4067097-4067418 bp Feature: domain Description: InsE Location: 4067097-406741 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DDE_Tnp_1_5 (pfam13737), PRK09413 (IS2 repressor TnpA; Reviewed)
PRK08178 (acetolactate synthase 1 small subunit)

Seq: AELA02000002.1 Escherichia coli TW10598 plasmid unnamed TW10598p_01, whole genome shotgun sequence (11176 bp)
Overview 1 RT 1: 4165-9762 bp Neighborhood of RT #1 [4165, 10499] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases DUF3560 Feature: gene Location: 4165-4425 bp Feature: domain Description: DUF905 Location: 4222-4420 bp Feature: domain Description: DUF905 Location: 42 2 2 -442 0 bp Feature: gene Location: 4455-4940 bp Feature: domain Description: PRK13732 Location: 4458-4938 bp Feature: domain Description: PRK13732 Location: 4458-4938 bp Feature: gene Location: 5090-6991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5357-6188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5357-6188 bp Feature: domain Description: Intron_maturas2 Location: 6302-6560 bp Feature: domain Description: Intron_maturas2 Location: 6302 -6560 bp Feature: domain Description: HNHc Note: nucleases Location: 6734-6896 bp Feature: domain Description: HNHc Note: nucleases Location: 6734-6896 bp Feature: gene Location: 8528-9091 bp Feature: domain Description: AdoMet_MTases Location: 8690-8990 bp Feature: domain Description: AdoMet_MTases Location: 8690-8990 bp Feature: gene Location: 9138-10499 bp Feature: domain Description: DUF3560 Location: 9405-9762 bp Feature: domain Description: DUF3560 Location: 9405-9762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AdoMet_MTases (cl17173), DUF3560 (pfam12083)

Seq: AELA02000029.1 Escherichia coli TW10598 plasmid unnamed TW10598p_28, whole genome shotgun sequence (30148 bp)
Overview 1 RT 1: 10729-14831 bp Neighborhood of RT #1 [10729, 14866] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 10729-11055 bp Feature: domain Description: InsE Location: 10732-11053 bp Feature: domain Description: InsE Location: 1073 2-11053 bp Feature: gene Location: 11052-11534 bp Feature: domain Description: PHA02517 Location: 11115-11469 bp Feature: domain Description: PHA02517 Location: 11115-11469 bp Feature: gene Location: 12141-13649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12399-13131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 99-13 13 1 bp Feature: domain Description: GIIM Note: maturase Location: 13206-13404 bp Feature: domain Description: GIIM Note: maturase Location: 13 206-13 404 bp Feature: gene Location: 13724-14212 bp Feature: domain Description: PHA02517 Location: 13733-14210 bp Feature: domain Description: PHA02517 Location: 13 73 3 -14210 bp Feature: gene Location: 14369-14866 bp Feature: domain Description: COG3547 Location: 14381-14831 bp Feature: domain Description: COG3 547 Location: 143 81-1483 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )