myRT

myRT report for GCA_000166615.2_ASM16661v2

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Seq: AELE01000034.1 Escherichia coli TW14425 TW14425_c34, whole genome shotgun sequence (32553 bp)
Overview 1 RT 1: 26563-32132 bp Neighborhood of RT #1 [26563, 32182] PRK09409 AidA AidA RVT-GII GIIM PHA02517 LZ_Tnp_IS66 Feature: gene Location: 26563-27468 bp Feature: domain Description: PRK09409 Location: 26566-27466 bp Feature: domain Description: PRK09409 Location: 26566-27466 bp Feature: gene Location: 27654-29213 bp Feature: domain Description: AidA Location: 27663-28767 bp Feature: domain Description: AidA Location: 27663-28767 bp Feature: domain Description: AidA Location: 28806-29208 bp Feature: domain Description: AidA Location: 28806-29208 bp Feature: gene Location: 29797-31320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30070-30802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30070-30802 bp Feature: domain Description: GIIM Note: maturase Location: 30877-31075 bp Feature: domain Description: GIIM Note: maturase Location: 30877-31 075 bp Feature: gene Location: 31497-31883 bp Feature: domain Description: PHA02517 Location: 31500-31881 bp Feature: domain Description: PHA0251 7 Location: 31 500-31 881 bp Feature: gene Location: 31886-32182 bp Feature: domain Description: LZ_Tnp_IS66 Location: 32066-32132 bp Feature: domain Description: LZ_Tnp_IS66 Location: 32066-321 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), AidA (COG3468), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), LZ_Tnp_IS66 (pfam13007)

Seq: AELE01000013.1 Escherichia coli TW14425 TW14425_c13, whole genome shotgun sequence (187214 bp)
Overview 1 RT 1: 50003-53885 bp Neighborhood of RT #1 [50003, 53890] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 50003-50461 bp Feature: domain Description: dut Location: 50009-50456 bp Feature: domain Description: dut Location: 50009-50456 bp Feature: gene Location: 50568-51164 bp Feature: domain Description: slmA Location: 50574-51150 bp Feature: domain Description: slmA Location: 50574-51150 bp Feature: gene Location: 51210-52169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51345-51894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51345-51894 bp Feature: gene Location: 52467-53123 bp Feature: domain Description: pyrE Location: 52485-53118 bp Feature: domain Description: pyrE Location: 52 485-53118 bp Feature: gene Location: 53174-53890 bp Feature: domain Description: rph Location: 53177-53885 bp Feature: domain Description: rph Location: 53177-53885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AELE01000008.1 Escherichia coli TW14425 TW14425_c8, whole genome shotgun sequence (194416 bp)
Overview 1 RT 1: 170049-176270 bp Neighborhood of RT #1 [170049, 176392] prfC SLATT_5 RVT-UG17 Caudo_TAP Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 170049-171635 bp Feature: domain Description: prfC Location: 170067-171633 bp Feature: domain Description: prfC Location: 170067-17163 3 bp Feature: gene Location: 172166-172765 bp Feature: domain Description: SLATT_5 Location: 172328-172724 bp Feature: domain Description: SLATT_5 Location: 1723 28-172724 bp Feature: gene Location: 172847-174217 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 173075-173681 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 173 075-173 681 bp Feature: gene Location: 174330-174914 bp Feature: domain Description: Caudo_TAP Location: 174546-174903 bp Feature: domain Description: Caudo_TAP Location: 174546-174903 bp Feature: gene Location: 174914-176392 bp Feature: domain Description: Collar Location: 175760-175898 bp Feature: domain Description: Collar Location: 175760-175898 bp Feature: domain Description: Phage_fiber Location: 175949-175988 bp Feature: domain Description: Phage_fiber Location: 175949-175988 bp Feature: domain Description: Phage_fiber Location: 176045-176084 bp Feature: domain Description: Phage_fiber Location: 176045-176084 bp Feature: domain Description: Phage_fiber Location: 176195-176234 bp Feature: domain Description: Phage_fiber Location: 176195-17623 4 bp Feature: domain Description: Phage_fiber Location: 176240-176270 bp Feature: domain Description: Phage_fiber Location: 176240-176270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Collar (pfam07484), Phage_fiber (pfam03335)