myRT

myRT report for GCA_000167835.1_ASM16783v1

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Seq: AAJU02000006.1 Escherichia coli F11 gcontig_1112495917046, whole genome shotgun sequence (173985 bp)
Overview 1 RT 1: 83368-88509 bp Neighborhood of RT #1 [83368, 88658] HTH_29 HTH_33 DDE_3 RVT-AbiP2 PRK09183 COG4584 Feature: gene Location: 83368-83481 bp Feature: gene Location: 84309-85346 bp Ori: EDV67934.1 Feature: domain Description: HTH_29 Location: 84405-84576 bp Feature: domain Description: HTH_29 Location: 84405-84576 bp Feature: domain Description: HTH_33 Location: 84609-84771 bp Feature: domain Description: HTH_33 Location: 84609-84771 bp Feature: domain Description: DDE_3 Location: 84813-85242 bp Feature: domain Description: DDE_3 Location: 8481 3-85242 bp Feature: gene Location: 85448-86818 bp Ori: EDV67973.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 85709-86165 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 85709-861 65 bp Feature: gene Location: 86857-87636 bp Ori: EDV67880.1 Feature: domain Description: PRK09183 Location: 86863-87634 bp Feature: domain Description: PRK091 83 Location: 86863-87634 bp Feature: gene Location: 87636-88658 bp Ori: EDV67848.1 Feature: domain Description: COG4584 Location: 87639-88509 bp Feature: domain Description: COG4584 Location: 87639-88509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )

Seq: AAJU02000049.1 Escherichia coli F11 gcontig_1112495917028, whole genome shotgun sequence (27177 bp)
Overview 1 RT 1: 9484-12996 bp Neighborhood of RT #1 [9484, 13061] COG3436 InsE RVT-GII GIIM PHA02517 Feature: gene Location: 9484-9831 bp Ori: EDV64997.1 Feature: domain Description: COG3436 Location: 9490-9826 bp Feature: domain Description: COG3436 Location: 9490-982 6 bp Feature: gene Location: 9828-10232 bp Ori: EDV64993.1 Feature: domain Description: InsE Location: 9858-10194 bp Feature: domain Description: InsE Location: 9858-10194 bp Feature: gene Location: 10734-12257 bp Ori: EDV64995.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11007-11739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11007-11739 bp Feature: domain Description: GIIM Note: maturase Location: 11814-12012 bp Feature: domain Description: GIIM Note: maturase Location: 11814-12 012 bp Feature: gene Location: 12439-12552 bp Feature: gene Location: 12849-13061 bp Ori: EDV65011.1 Feature: domain Description: PHA02517 Location: 12852-12996 bp Feature: domain Description: PHA02 517 Location: 12 852 -12 996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)