myRT

myRT report for GCA_000167915.2_ASM16791v2

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Seq: CP001065.1 Escherichia coli 53638 plasmid p53638_75, complete sequence (75089 bp)
Overview 1 RT 1: 35082-39740 bp Neighborhood of RT #1 [35082, 39740] Plasmid_stab_B RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 35082-35474 bp Feature: domain Description: Plasmid_stab_B Location: 35106-35316 bp Feature: domain Description: Plasmid_stab_B Location: 351 06-3531 6 bp Feature: gene Location: 35758-35898 bp Feature: gene Location: 36760-38484 bp Feature: RT Description: RVT_N Location: 36817-37054 bp Feature: RT Description: RVT_N Location: 3681 7-37054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37105-37753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 05-37753 bp Feature: domain Description: YkfC Location: 37885-38041 bp Feature: domain Description: YkfC Location: 37885-38041 bp Feature: domain Description: HNHc Note: nucleases Location: 38269-38428 bp Feature: domain Description: HNHc Note: nucleases Location: 38269-38428 bp Feature: gene Location: 38561-39463 bp Feature: domain Description: DUF1281 Location: 38630-39158 bp Feature: domain Description: DUF1 281 Location: 38630-391 58 bp Feature: domain Description: DUF1281_C Location: 39164-39419 bp Feature: domain Description: DUF1 281 _C Location: 391 64-3941 9 bp Feature: gene Location: 39615-39740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: CP001064.1 Escherichia coli 53638 plasmid p53638_226, complete sequence (225683 bp)
Overview 1 RT 1: 12253-16142 bp 2 RT 2: 103989-106964 bp Neighborhood of RT #1 [12253, 16156] InsE DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [103989, 106993] RVT_N RVT-GII HTH_23 InsE TnpB_IS66 Feature: gene Location: 12253-12579 bp Feature: domain Description: InsE Location: 12256-12577 bp Feature: domain Description: InsE Location: 12 2 56-12 577 bp Feature: gene Location: 13550-13687 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13562-13661 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13562 -13661 bp Feature: gene Location: 14165-15382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14351-15005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14351-15005 bp Feature: domain Description: GIIM Note: maturase Location: 15083-15305 bp Feature: domain Description: GIIM Note: maturase Location: 15083-15305 bp Feature: gene Location: 15498-15644 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 15510-15621 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 15510-1562 1 bp Feature: gene Location: 15671-16156 bp Feature: domain Description: COG3547 Location: 15689-16142 bp Feature: domain Description: COG3547 Location: 15689-16142 bp Feature: gene Location: 103989-104276 bp Feature: gene Location: 104301-104459 bp Feature: gene Location: 105322-105936 bp Feature: RT Description: RVT_N Location: 105370-105613 bp Feature: RT Description: RVT_N Location: 105370-105613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105658-105922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105658-10592 2 bp Feature: gene Location: 106005-106646 bp Feature: domain Description: HTH_23 Location: 106056-106155 bp Feature: domain Description: HTH_2 3 Location: 106056-106155 bp Feature: domain Description: InsE Location: 106278-106623 bp Feature: domain Description: InsE Location: 1062 78-10662 3 bp Feature: gene Location: 106646-106993 bp Feature: domain Description: TnpB_IS66 Location: 106673-106964 bp Feature: domain Description: TnpB_IS66 Location: 106673-106964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT_N (pfam13655), HTH_23 (pfam13384), TnpB_IS66 (pfam05717)