myRT

myRT report for GCA_000168055.1_ASM16805v1

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Seq: AAMD01000097.1 Stigmatella aurantiaca DW4/3-1 gsam_178, whole genome shotgun sequence (33321 bp)
Overview 1 RT 1: 12108-17741 bp Neighborhood of RT #1 [12108, 17866] COG3293 COG3293 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 HTH_Tnp_1 Feature: gene Location: 12108-13340 bp Feature: gene Location: 13629-14438 bp Feature: domain Description: COG3293 Location: 13644-13971 bp Feature: domain Description: COG3293 Location: 1 3644-1 3971 bp Feature: domain Description: COG3293 Location: 14028-14403 bp Feature: domain Description: COG3293 Location: 1 4028-1 4403 bp Feature: gene Location: 14662-15927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14866-15553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4866-1 5553 bp Feature: gene Location: 15897-17102 bp Feature: domain Description: LZ_Tnp_IS66 Location: 16101-16350 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 61 01 -1 6350 bp Feature: domain Description: zf-IS66 Location: 16374-16503 bp Feature: domain Description: zf-IS66 Location: 1 6374-1 6503 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16557-17001 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 6557-1 7001 bp Feature: gene Location: 17489-17866 bp Feature: domain Description: HTH_Tnp_1 Location: 17552-17741 bp Feature: domain Description: HTH_Tnp_1 Location: 1 7552-1 7741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), HTH_Tnp_1 (pfam01527)

Seq: AAMD01000019.1 Stigmatella aurantiaca DW4/3-1 gsam_478, whole genome shotgun sequence (84537 bp)
Overview 1 RT 1: 39328-43892 bp Neighborhood of RT #1 [39328, 43892] RVT-GII Methyltransf_25 Feature: gene Location: 39328-39753 bp Feature: gene Location: 40046-40624 bp Feature: gene Location: 40848-42674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41592-42282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41592 -42 2 82 bp Feature: gene Location: 42947-43555 bp Feature: domain Description: Methyltransf_25 Location: 43088-43340 bp Feature: domain Description: Methyltransf_2 5 Location: 43088-43340 bp Feature: gene Location: 43635-43892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Methyltransf_25 (pfam13649)

Seq: AAMD01000329.1 Stigmatella aurantiaca DW4/3-1 gsam_5, whole genome shotgun sequence (4825 bp)
Overview 1 RT 1: 34-3162 bp Neighborhood of RT #1 [34, 4121] RVT-GII DUF772 DDE_Tnp_1_6 SF2_C_Ski2 Feature: gene Location: 34-786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7-3 94 bp Feature: gene Location: 973-2586 bp Feature: domain Description: DUF772 Location: 1144-1372 bp Feature: domain Description: DUF772 Location: 1144-13 72 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2239-2536 bp Feature: domain Description: DDE_Tnp_1_6 Location: 223 9-253 6 bp Feature: gene Location: 2586-4121 bp Feature: domain Description: SF2_C_Ski2 Location: 2748-3162 bp Feature: domain Description: SF2_C_Ski2 Location: 2748-3 162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SF2_C_Ski2 (cd18795), RVT-GII, DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)

Seq: AAMD01000013.1 Stigmatella aurantiaca DW4/3-1 gsam_565, whole genome shotgun sequence (95085 bp)
Overview 1 RT 1: 53801-58779 bp Neighborhood of RT #1 [53801, 58779] MviM RVT-Retrons RT_Bac_retron_II Feature: gene Location: 53801-54292 bp Feature: gene Location: 54461-55612 bp Feature: domain Description: MviM Location: 54527-55514 bp Feature: domain Description: MviM Location: 54 527-55514 bp Feature: gene Location: 56150-56818 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56297-56513 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56297-56513 bp Feature: domain Description: RT_Bac_retron_II Location: 56513-56564 bp Feature: domain Description: RT_Bac_retron_II Location: 56513-56564 bp Feature: gene Location: 57360-58073 bp Feature: gene Location: 58303-58779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), RVT-Retrons, RT_Bac_retron_II (cd03487)

Seq: AAMD01000082.1 Stigmatella aurantiaca DW4/3-1 gsam_414, whole genome shotgun sequence (36061 bp)
Overview 1 RT 1: 129-4396 bp Neighborhood of RT #1 [129, 4509] RVT-Retrons ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ClC_sycA_like Feature: gene Location: 129-1571 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 681-1329 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 681-1329 bp Feature: gene Location: 1575-3065 bp Feature: domain Description: ELWxxDGT_rpt Location: 1728-1782 bp Feature: domain Description: ELWxxDGT_rpt Location: 1728-1782 bp Feature: domain Description: ELWxxDGT_rpt Location: 1791-1935 bp Feature: domain Description: ELWxxDGT_rpt Location: 1791-1935 bp Feature: domain Description: ELWxxDGT_rpt Location: 1947-2082 bp Feature: domain Description: ELWxxDGT_rpt Location: 1947-2082 bp Feature: domain Description: ELWxxDGT_rpt Location: 2097-2211 bp Feature: domain Description: ELWxxDGT_rpt Location: 2097-2211 bp Feature: domain Description: ELWxxDGT_rpt Location: 2568-2664 bp Feature: domain Description: ELWxxDGT_rpt Location: 25 68-2664 bp Feature: domain Description: ELWxxDGT_rpt Location: 2679-2814 bp Feature: domain Description: ELWxxDGT_rpt Location: 2679-2814 bp Feature: domain Description: ELWxxDGT_rpt Location: 2823-2958 bp Feature: domain Description: ELWxxDGT_rpt Location: 2823-295 8 bp Feature: domain Description: ELWxxDGT_rpt Location: 2973-3015 bp Feature: domain Description: ELWxxDGT_rpt Location: 2973-3015 bp Feature: gene Location: 3394-4509 bp Feature: domain Description: ClC_sycA_like Location: 3397-4396 bp Feature: domain Description: ClC_sycA_like Location: 3397-4396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ELWxxDGT_rpt (TIGR04534), ClC_sycA_like (cd03682)