myRT

myRT report for GCA_000168275.1_ASM16827v1

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Seq: AAQF01000163.1 Delta proteobacterium MLMS-1 ctg840, whole genome shotgun sequence (11198 bp)
Overview 1 RT 1: 1285-10305 bp Neighborhood of RT #1 [1285, 10313] RVT-GII GIIM RVT_N RVT-GII GIIM PRK09737 Feature: gene Location: 1285-2109 bp Feature: gene Location: 2281-3198 bp Feature: gene Location: 3571-4218 bp Ori: EAT03042.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4033-4150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4033-41 50 bp Feature: gene Location: 4242-4595 bp Ori: EAT03043.1 Feature: domain Description: GIIM Note: maturase Location: 4254-4407 bp Feature: domain Description: GIIM Note: maturase Location: 4254-4407 bp Feature: gene Location: 4681-6135 bp Ori: EAT03044.1 Feature: domain Description: RVT_N Location: 4723-4960 bp Feature: domain Description: RVT_N Location: 4723-4960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5011-5635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 1 -5635 bp Feature: domain Description: GIIM Note: maturase Location: 5692-5920 bp Feature: domain Description: GIIM Note: maturase Location: 5692-5920 bp Feature: gene Location: 7839-8747 bp Feature: gene Location: 9960-10313 bp Ori: EAT03045.1 Feature: domain Description: PRK09737 Location: 9972-10305 bp Feature: domain Description: PRK09737 Location: 9972-1 0305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), PRK09737 (type I restriction-modification system specificity subunit)

Seq: AAQF01000035.1 Delta proteobacterium MLMS-1 ctg1012, whole genome shotgun sequence (35366 bp)
Overview 1 RT 1: 110-3415 bp 2 RT 2: 31693-34003 bp Neighborhood of RT #1 [110, 3483] PilE RVT-GII PIN_VapC4-5_FitB-like PhdYeFM_antitox Neighborhood of RT #2 [31693, 34374] RVT-GII Feature: gene Location: 110-463 bp Ori: EAT05212.1 Feature: domain Description: PilE Location: 128-311 bp Feature: domain Description: PilE Location: 12 8-311 bp Feature: gene Location: 923-2299 bp Ori: EAT05213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 38-192 8 bp Feature: gene Location: 2813-3229 bp Ori: EAT05214.1 Feature: domain Description: PIN_VapC4-5_FitB-like Location: 2822-3224 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 2 82 2 -32 2 4 bp Feature: gene Location: 3229-3483 bp Ori: EAT05215.1 Feature: domain Description: PhdYeFM_antitox Location: 3244-3415 bp Feature: domain Description: PhdYeFM_antitox Location: 32 44-3415 bp Feature: gene Location: 31693-32220 bp Feature: gene Location: 32217-32441 bp Feature: gene Location: 32998-34374 bp Ori: EAT05237.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33313-34003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33313-34003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilE (COG4968), RVT-GII, PIN_VapC4-5_FitB-like (cd18754), PhdYeFM_antitox (pfam02604)

Seq: AAQF01000070.1 Delta proteobacterium MLMS-1 ctg976, whole genome shotgun sequence (22694 bp)
Overview 1 RT 1: 12641-16759 bp Neighborhood of RT #1 [12641, 16764] Phd RVT-GII PIN_NgFitB-like Feature: gene Location: 12641-12880 bp Ori: EAT04362.1 Feature: domain Description: Phd Location: 12644-12779 bp Feature: domain Description: Phd Location: 12644-12779 bp Feature: gene Location: 13088-13351 bp Feature: gene Location: 13785-15161 bp Ori: EAT04363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14100-14790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14100-14790 bp Feature: gene Location: 16089-16343 bp Feature: gene Location: 16348-16764 bp Ori: EAT04364.1 Feature: domain Description: PIN_NgFitB-like Location: 16354-16759 bp Feature: domain Description: PIN_NgFitB-like Location: 163 54-16759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phd (COG4118), RVT-GII, PIN_NgFitB-like (cd18731)

Seq: AAQF01000071.1 Delta proteobacterium MLMS-1 ctg996, whole genome shotgun sequence (22568 bp)
Overview 1 RT 1: 1-5227 bp Neighborhood of RT #1 [1, 5250] group_II_RT_mat RVT-GII fliH Gp49 Feature: gene Location: 1-468 bp Ori: EAT04324.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 64-358 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 64 -358 bp Feature: gene Location: 1034-2410 bp Ori: EAT04325.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1349-2039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134 9-2039 bp Feature: gene Location: 3613-4293 bp Ori: EAT04326.1 Feature: domain Description: fliH Location: 3952-4141 bp Feature: domain Description: fliH Location: 3952-4 14 1 bp Feature: gene Location: 4918-5250 bp Ori: EAT04327.1 Feature: domain Description: Gp49 Location: 4963-5227 bp Feature: domain Description: Gp4 9 Location: 4 963-5227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, fliH (PRK13386), Gp49 (pfam05973)

Seq: AAQF01000304.1 Delta proteobacterium MLMS-1 ctg786, whole genome shotgun sequence (5134 bp)
Overview 1 RT 1: 3442-4760 bp Neighborhood of RT #1 [3442, 5134] DUF2281 RVT-GII Feature: gene Location: 3442-3597 bp Feature: gene Location: 3710-3910 bp Ori: EAT02068.1 Feature: domain Description: DUF2281 Location: 3734-3812 bp Feature: domain Description: DUF2281 Location: 3734-3812 bp Feature: gene Location: 4412-5134 bp Ori: EAT02064.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4418-4760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4418-4760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2281 (pfam10047), RVT-GII

Seq: AAQF01000022.1 Delta proteobacterium MLMS-1 ctg1024, whole genome shotgun sequence (44313 bp)
Overview 1 RT 1: 12526-16945 bp Neighborhood of RT #1 [12526, 17010] RelE YiaG RVT-GII PleD PAS PleD CheY Feature: gene Location: 12526-12864 bp Ori: EAT05650.1 Feature: domain Description: RelE Location: 12697-12835 bp Feature: domain Description: RelE Location: 126 97-12835 bp Feature: gene Location: 12861-13175 bp Ori: EAT05651.1 Feature: domain Description: YiaG Location: 12933-13155 bp Feature: domain Description: YiaG Location: 12933-13155 bp Feature: gene Location: 13631-15070 bp Ori: EAT05652.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14009-14696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14009-146 96 bp Feature: gene Location: 15230-16546 bp Ori: EAT05653.1 Feature: domain Description: PleD Location: 15254-15671 bp Feature: domain Description: PleD Location: 15254-156 71 bp Feature: domain Description: PAS Location: 15719-16031 bp Feature: domain Description: PAS Location: 15719-16 031 bp Feature: domain Description: PleD Location: 16052-16526 bp Feature: domain Description: PleD Location: 16 052-16 526 bp Feature: gene Location: 16546-17010 bp Ori: EAT05654.1 Feature: domain Description: CheY Location: 16567-16945 bp Feature: domain Description: CheY Location: 16 56 7-16 945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), YiaG (COG2944), RVT-GII, PleD (COG3706), PAS (smart00091), CheY (COG0784)

Seq: AAQF01000302.1 Delta proteobacterium MLMS-1 ctg605, whole genome shotgun sequence (5166 bp)
Overview 1 RT 1: 722-3591 bp Neighborhood of RT #1 [722, 3623] RVT-GII PIN_VapC-like AbrB Feature: gene Location: 722-2098 bp Ori: EAT02074.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037 -17 27 bp Feature: gene Location: 2980-3393 bp Ori: EAT02075.1 Feature: domain Description: PIN_VapC-like Location: 2992-3370 bp Feature: domain Description: PIN_VapC-like Location: 2992-337 0 bp Feature: gene Location: 3390-3623 bp Ori: EAT02076.1 Feature: domain Description: AbrB Location: 3396-3591 bp Feature: domain Description: AbrB Location: 3396-3591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PIN_VapC-like (cd18715), AbrB (pfam05145)

Seq: AAQF01000129.1 Delta proteobacterium MLMS-1 ctg890, whole genome shotgun sequence (13449 bp)
Overview 1 RT 1: 99-4511 bp Neighborhood of RT #1 [99, 4522] RVT-GII GIIM RHOD Ferritin_like_AB Nterm_to_SelD Feature: gene Location: 99-401 bp Feature: gene Location: 661-2007 bp Ori: EAT03405.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98 8 -1642 bp Feature: domain Description: GIIM Note: maturase Location: 1714-1915 bp Feature: domain Description: GIIM Note: maturase Location: 1714-1915 bp Feature: gene Location: 2578-3396 bp Ori: EAT03406.1 Feature: domain Description: RHOD Location: 2656-2896 bp Feature: domain Description: RHOD Location: 2656-28 96 bp Feature: domain Description: Ferritin_like_AB Location: 2965-3361 bp Feature: domain Description: Ferritin_like_AB Location: 2965-3361 bp Feature: gene Location: 3386-4522 bp Ori: EAT03407.1 Feature: domain Description: Nterm_to_SelD Location: 3413-4511 bp Feature: domain Description: Nterm_to_SelD Location: 3413-4511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RHOD (smart00450), Ferritin_like_AB (cd01045), Nterm_to_SelD (TIGR03169)

Seq: AAQF01000116.1 Delta proteobacterium MLMS-1 ctg893, whole genome shotgun sequence (15625 bp)
Overview 1 RT 1: 2-6737 bp Neighborhood of RT #1 [2, 6737] RVT-Retrons Feature: gene Location: 2-400 bp Feature: gene Location: 766-1662 bp Ori: EAT03589.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 865-1423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 865-1423 bp Feature: gene Location: 2602-4845 bp Feature: gene Location: 5367-6737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: AAQF01000350.1 Delta proteobacterium MLMS-1 ctg699, whole genome shotgun sequence (4263 bp)
Overview 1 RT 1: 1-2553 bp Neighborhood of RT #1 [1, 2558] RVT-GII COG3636 NT_KNTase_like Feature: gene Location: 1-678 bp Ori: EAT01878.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-307 bp Feature: gene Location: 1154-1456 bp Ori: EAT01879.1 Feature: domain Description: COG3636 Location: 1160-1448 bp Feature: domain Description: COG3636 Location: 1160-1448 bp Feature: gene Location: 2181-2558 bp Ori: EAT01880.1 Feature: domain Description: NT_KNTase_like Location: 2295-2553 bp Feature: domain Description: NT_KNTase_like Location: 2295-2553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3636 (DNA-binding prophage protein ), NT_KNTase_like (cd05403)

Seq: AAQF01000380.1 Delta proteobacterium MLMS-1 ctg734, whole genome shotgun sequence (3811 bp)
Overview 1 RT 1: 1-2525 bp Neighborhood of RT #1 [1, 2899] RVT-GII RVT-GII Feature: gene Location: 1-603 bp Ori: EAT01780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-229 bp Feature: gene Location: 1460-2899 bp Ori: EAT01781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AAQF01000095.1 Delta proteobacterium MLMS-1 ctg933, whole genome shotgun sequence (18309 bp)
Overview 1 RT 1: 14273-17959 bp Neighborhood of RT #1 [14273, 17964] PIN_VapC-like Unstab_antitox RVT-GII COG4710 RelE Feature: gene Location: 14273-14686 bp Ori: EAT03909.1 Feature: domain Description: PIN_VapC-like Location: 14285-14663 bp Feature: domain Description: PIN_VapC-like Location: 14285-14663 bp Feature: gene Location: 14888-15121 bp Ori: EAT03910.1 Feature: domain Description: Unstab_antitox Location: 14915-15074 bp Feature: domain Description: Unstab_antitox Location: 14915-15074 bp Feature: gene Location: 15717-17093 bp Ori: EAT03911.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16032-16722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16032-16722 bp Feature: gene Location: 17487-17711 bp Ori: EAT03912.1 Feature: domain Description: COG4710 Location: 17496-17706 bp Feature: domain Description: COG4710 Location: 17496-17706 bp Feature: gene Location: 17695-17964 bp Ori: EAT03914.1 Feature: domain Description: RelE Location: 17704-17959 bp Feature: domain Description: RelE Location: 17704-17959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), Unstab_antitox (pfam09720), RVT-GII, COG4710 (Predicted DNA-binding protein with an HTH domain ), RelE (pfam06296)