myRT

myRT report for GCA_000169095.1_ASM16909v1

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Seq: AAVU01000066.1 Lyngbya sp. PCC 8106 1099428180513, whole genome shotgun sequence (25735 bp)
Overview 1 RT 1: 9015-15969 bp Neighborhood of RT #1 [9015, 15974] OrfB_IS605 InsQ RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM McrA Pat17_PNPLA8_PNPLA9_like FAS1 Feature: gene Location: 9015-9305 bp Ori: EAW33659.1 Feature: domain Description: OrfB_IS605 Location: 9018-9294 bp Feature: domain Description: OrfB_IS605 Location: 901 8-9294 bp Feature: gene Location: 9298-9660 bp Ori: EAW33660.1 Feature: domain Description: InsQ Location: 9301-9562 bp Feature: domain Description: InsQ Location: 9301 -9562 bp Feature: gene Location: 9644-10945 bp Ori: EAW33661.1 Feature: domain Description: RVT_N Location: 9689-9935 bp Feature: domain Description: RVT_N Location: 9689-9935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9977-10643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9977-1 0643 bp Feature: domain Description: GIIM Note: maturase Location: 10742-10883 bp Feature: domain Description: GIIM Note: maturase Location: 1 0742-1 0883 bp Feature: gene Location: 11655-13436 bp Ori: EAW33662.1 Feature: domain Description: RVT_N Location: 11691-11937 bp Feature: domain Description: RVT_N Location: 1 1 691 -1 1 937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11979-12651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 979-1 2651 bp Feature: domain Description: GIIM Note: maturase Location: 12735-12963 bp Feature: domain Description: GIIM Note: maturase Location: 1 2735-1 2963 bp Feature: domain Description: McrA Location: 13056-13365 bp Feature: domain Description: McrA Location: 1 3056-1 3365 bp Feature: gene Location: 14200-15336 bp Ori: EAW33663.1 Feature: domain Description: Pat17_PNPLA8_PNPLA9_like Location: 14215-15088 bp Feature: domain Description: Pat1 7_PNPLA8_PNPLA9_like Location: 1 421 5-1 5088 bp Feature: gene Location: 15573-15974 bp Ori: EAW33664.1 Feature: domain Description: FAS1 Location: 15579-15969 bp Feature: domain Description: FAS1 Location: 1 5579-1 5969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OrfB_IS605 (pfam01385), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Pat17_PNPLA8_PNPLA9_like (cd07199), FAS1 (smart00554)

Seq: AAVU01000009.1 Lyngbya sp. PCC 8106 1099428180535, whole genome shotgun sequence (171481 bp)
Overview 1 RT 1: 143217-151519 bp Neighborhood of RT #1 [143217, 151605] PRK05722 OpcA RVT_N RVT-GII GIIM HNH HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind Feature: gene Location: 143217-144746 bp Ori: EAW37698.1 Feature: domain Description: PRK05722 Location: 143262-144741 bp Feature: domain Description: PRK0572 2 Location: 1432 62 -144741 bp Feature: gene Location: 145013-146347 bp Ori: EAW37699.1 Feature: domain Description: OpcA Location: 145040-146267 bp Feature: domain Description: OpcA Location: 145040-1462 67 bp Feature: gene Location: 146486-148213 bp Ori: EAW37700.1 Feature: domain Description: RVT_N Location: 146522-146768 bp Feature: domain Description: RVT_N Location: 14652 2 -146768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146810-147476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146810-147476 bp Feature: domain Description: GIIM Note: maturase Location: 147581-147812 bp Feature: domain Description: GIIM Note: maturase Location: 147581-147812 bp Feature: domain Description: HNH Note: nucleases Location: 148025-148160 bp Feature: domain Description: HNH Note: nucleases Location: 14802 5-148160 bp Feature: gene Location: 149169-149345 bp Feature: gene Location: 150175-151605 bp Ori: EAW37702.1 Feature: domain Description: HemolysinCabind Location: 150193-150295 bp Feature: domain Description: HemolysinCabind Location: 150193-1502 95 bp Feature: domain Description: HemolysinCabind Location: 150328-150427 bp Feature: domain Description: HemolysinCabind Location: 15032 8-15042 7 bp Feature: domain Description: HemolysinCabind Location: 150688-150793 bp Feature: domain Description: HemolysinCabind Location: 150688-150793 bp Feature: domain Description: HemolysinCabind Location: 151051-151156 bp Feature: domain Description: HemolysinCabind Location: 151051-151156 bp Feature: domain Description: HemolysinCabind Location: 151414-151519 bp Feature: domain Description: HemolysinCabind Location: 151414-151519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05722 (glucose-6-phosphate 1-dehydrogenase; Validated), OpcA (TIGR00534), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HemolysinCabind (pfam00353)

Seq: AAVU01000004.1 Lyngbya sp. PCC 8106 1099428180516, whole genome shotgun sequence (239124 bp)
Overview 1 RT 1: 57355-62143 bp Neighborhood of RT #1 [57355, 62157] Cupin_3 RVT_N RVT-GII GIIM HNHc OKR_DC_1_N KaiA PRK09301 Feature: gene Location: 57355-57582 bp Feature: gene Location: 57617-57970 bp Ori: EAW38427.1 Feature: domain Description: Cupin_3 Location: 57740-57953 bp Feature: domain Description: Cupin_3 Location: 57740-57953 bp Feature: gene Location: 58703-60439 bp Ori: EAW38428.1 Feature: domain Description: RVT_N Location: 58739-58985 bp Feature: domain Description: RVT_N Location: 5873 9-58985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59027-59693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59027-59693 bp Feature: domain Description: GIIM Note: maturase Location: 59807-60029 bp Feature: domain Description: GIIM Note: maturase Location: 59807-60029 bp Feature: domain Description: HNHc Note: nucleases Location: 60218-60374 bp Feature: domain Description: HNHc Note: nucleases Location: 60218-603 74 bp Feature: gene Location: 60813-61649 bp Ori: EAW38429.1 Feature: domain Description: OKR_DC_1_N Location: 60819-61083 bp Feature: domain Description: OKR_DC_1_N Location: 60819-61083 bp Feature: domain Description: KaiA Location: 61281-61644 bp Feature: domain Description: KaiA Location: 61281-61644 bp Feature: gene Location: 61843-62157 bp Ori: EAW38430.1 Feature: domain Description: PRK09301 Location: 61855-62143 bp Feature: domain Description: PRK093 01 Location: 61855-62143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_3 (pfam05899), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), OKR_DC_1_N (pfam03709), KaiA (pfam07688), PRK09301 (circadian clock protein KaiB; Provisional)

Seq: AAVU01000021.1 Lyngbya sp. PCC 8106 1099428180540, whole genome shotgun sequence (108332 bp)
Overview 1 RT 1: 92475-97476 bp Neighborhood of RT #1 [92475, 97520] InsQ RVT_N RVT-GII GIIM McrA Y1_Tnp Nudix_Hydrolase_37 Feature: gene Location: 92475-92675 bp Feature: gene Location: 92917-93840 bp Ori: EAW36208.1 Feature: domain Description: InsQ Location: 93109-93817 bp Feature: domain Description: InsQ Location: 93109-93817 bp Feature: gene Location: 93952-95682 bp Ori: EAW36209.1 Feature: domain Description: RVT_N Location: 93988-94234 bp Feature: domain Description: RVT_N Location: 93988-94 234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94273-94945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 273-94 94 5 bp Feature: domain Description: GIIM Note: maturase Location: 95059-95281 bp Feature: domain Description: GIIM Note: maturase Location: 95059-95281 bp Feature: domain Description: McrA Location: 95392-95635 bp Feature: domain Description: McrA Location: 95392-95635 bp Feature: gene Location: 96420-96833 bp Ori: EAW36210.1 Feature: domain Description: Y1_Tnp Location: 96459-96810 bp Feature: domain Description: Y1_Tnp Location: 964 59-96810 bp Feature: gene Location: 97041-97520 bp Ori: EAW36211.1 Feature: domain Description: Nudix_Hydrolase_37 Location: 97107-97476 bp Feature: domain Description: Nudix_Hydrolase_37 Location: 97107-974 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Y1_Tnp (pfam01797), Nudix_Hydrolase_37 (cd04696)

Seq: AAVU01000013.1 Lyngbya sp. PCC 8106 1099428180538, whole genome shotgun sequence (163401 bp)
Overview 1 RT 1: 7673-16309 bp Neighborhood of RT #1 [7673, 16309] apcB InsQ RVT_N RVT-GII GIIM HNH RVT_N RVT-GII GIIM HNH YqxC YqxC Feature: gene Location: 7673-8182 bp Ori: EAW37044.1 Feature: domain Description: apcB Location: 7679-8180 bp Feature: domain Description: apcB Location: 7679-8180 bp Feature: gene Location: 8453-9214 bp Ori: EAW37045.1 Feature: domain Description: InsQ Location: 8597-9194 bp Feature: domain Description: InsQ Location: 85 97-9194 bp Feature: gene Location: 9799-11604 bp Ori: EAW37046.1 Feature: domain Description: RVT_N Location: 9835-10081 bp Feature: domain Description: RVT_N Location: 9835 -10081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10123-10804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10123-10804 bp Feature: domain Description: GIIM Note: maturase Location: 10912-11140 bp Feature: domain Description: GIIM Note: maturase Location: 10912-11140 bp Feature: domain Description: HNH Note: nucleases Location: 11365-11500 bp Feature: domain Description: HNH Note: nucleases Location: 11365 -115 00 bp Feature: gene Location: 11645-11926 bp Feature: gene Location: 12507-14312 bp Ori: EAW37048.1 Feature: domain Description: RVT_N Location: 12543-12789 bp Feature: domain Description: RVT_N Location: 125 43-12789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12831-13512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12831-135 12 bp Feature: domain Description: GIIM Note: maturase Location: 13614-13845 bp Feature: domain Description: GIIM Note: maturase Location: 13614-13845 bp Feature: domain Description: HNH Note: nucleases Location: 14067-14199 bp Feature: domain Description: HNH Note: nucleases Location: 14067-14199 bp Feature: gene Location: 14710-15612 bp Ori: EAW37049.1 Feature: domain Description: YqxC Location: 14719-15142 bp Feature: domain Description: YqxC Location: 14719-15 142 bp Feature: domain Description: YqxC Location: 15193-15511 bp Feature: domain Description: YqxC Location: 15 193-15 5 11 bp Feature: gene Location: 15617-16309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT apcB (TIGR01337), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), YqxC (COG1189)

Seq: AAVU01000085.1 Lyngbya sp. PCC 8106 1099428180467, whole genome shotgun sequence (10019 bp)
Overview 1 RT 1: 5423-9887 bp Neighborhood of RT #1 [5423, 9907] PBP2_TMBP_like GT_2_like_a RVT-UG16 PyrE Feature: gene Location: 5423-6739 bp Ori: EAW33340.1 Feature: domain Description: PBP2_TMBP_like Location: 5546-6725 bp Feature: domain Description: PBP2_TMBP_like Location: 5546 -6 725 bp Feature: gene Location: 6880-7611 bp Ori: EAW33341.1 Feature: domain Description: GT_2_like_a Location: 6892-7597 bp Feature: domain Description: GT_2_like_a Location: 6 892-7597 bp Feature: gene Location: 7713-9209 bp Ori: EAW33342.1 Gene: pyrE Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 8082-8487 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 8082-8487 bp Feature: gene Location: 9281-9907 bp Ori: EAW33343.1 Feature: domain Description: PyrE Location: 9365-9887 bp Feature: domain Description: PyrE Location: 936 5-9887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TMBP_like (cd13585), GT_2_like_a (cd02522), RVT-UG16, PyrE (COG0461)

Seq: AAVU01000015.1 Lyngbya sp. PCC 8106 1099428180555, whole genome shotgun sequence (145495 bp)
Overview 1 RT 1: 134901-140945 bp Neighborhood of RT #1 [134901, 140962] LipA Arm-DNA-bind_2 Phage_int_SAM_5 RVT_N RVT-GII GIIM HNHc InsQ INT_ICEBs1_C_like Feature: gene Location: 134901-135812 bp Ori: EAW36907.1 Feature: domain Description: LipA Location: 134934-135792 bp Feature: domain Description: LipA Location: 134934-1357 92 bp Feature: gene Location: 136117-136806 bp Ori: EAW36908.1 Feature: domain Description: Arm-DNA-bind_2 Location: 136138-136303 bp Feature: domain Description: Arm-DNA-bind_2 Location: 136138-136303 bp Feature: domain Description: Phage_int_SAM_5 Location: 136363-136621 bp Feature: domain Description: Phage_int_SAM_5 Location: 136363-136621 bp Feature: gene Location: 137514-139214 bp Ori: EAW36909.1 Feature: domain Description: RVT_N Location: 137568-137814 bp Feature: domain Description: RVT_N Location: 137 568-137 814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137862-138513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137 862-138513 bp Feature: domain Description: GIIM Note: maturase Location: 138564-138798 bp Feature: domain Description: GIIM Note: maturase Location: 138564-1387 98 bp Feature: domain Description: HNHc Note: nucleases Location: 139026-139182 bp Feature: domain Description: HNHc Note: nucleases Location: 139026-139182 bp Feature: gene Location: 139223-140443 bp Ori: EAW36910.1 Feature: domain Description: InsQ Location: 139331-140327 bp Feature: domain Description: InsQ Location: 139331-140327 bp Feature: gene Location: 140525-140962 bp Ori: EAW36911.1 Feature: domain Description: INT_ICEBs1_C_like Location: 140624-140945 bp Feature: domain Description: INT_ICEBs1_C_like Location: 140624-140945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LipA (COG0320), Arm-DNA-bind_2 (pfam12167), Phage_int_SAM_5 (pfam13102), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675), INT_ICEBs1_C_like (cd01189)

Seq: AAVU01000047.1 Lyngbya sp. PCC 8106 1099428180559, whole genome shotgun sequence (54269 bp)
Overview 1 RT 1: 12654-25062 bp Neighborhood of RT #1 [12654, 25067] InsQ InsQ RVT-GII GIIM HNH InsQ OrfB_Zn_ribbon InsQ RVT-GII GIIM HNHc RVT_N RVT-GII protease_PatA Feature: gene Location: 12654-13325 bp Ori: EAW34302.1 Feature: domain Description: InsQ Location: 12663-13254 bp Feature: domain Description: InsQ Location: 12663-13254 bp Feature: gene Location: 13442-13732 bp Ori: EAW34303.1 Feature: domain Description: InsQ Location: 13445-13712 bp Feature: domain Description: InsQ Location: 13445-13712 bp Feature: gene Location: 14677-16212 bp Ori: EAW34304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14740-15436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14740-15436 bp Feature: domain Description: GIIM Note: maturase Location: 15535-15766 bp Feature: domain Description: GIIM Note: maturase Location: 15535-15766 bp Feature: domain Description: HNH Note: nucleases Location: 15991-16126 bp Feature: domain Description: HNH Note: nucleases Location: 15991-16126 bp Feature: gene Location: 17126-18439 bp Ori: EAW34305.1 Feature: domain Description: InsQ Location: 17129-18269 bp Feature: domain Description: InsQ Location: 17129-18 269 bp Feature: gene Location: 18624-19019 bp Ori: EAW34306.1 Feature: domain Description: OrfB_Zn_ribbon Location: 18702-18909 bp Feature: domain Description: OrfB_Zn_ribbon Location: 18 702-18 909 bp Feature: gene Location: 19030-19848 bp Ori: EAW34307.1 Feature: domain Description: InsQ Location: 19240-19831 bp Feature: domain Description: InsQ Location: 19240-198 31 bp Feature: gene Location: 19845-20744 bp Ori: EAW34308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19848-20031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198 48 -20031 bp Feature: domain Description: GIIM Note: maturase Location: 20133-20364 bp Feature: domain Description: GIIM Note: maturase Location: 20133-20364 bp Feature: domain Description: HNHc Note: nucleases Location: 20565-20727 bp Feature: domain Description: HNHc Note: nucleases Location: 20565-20727 bp Feature: gene Location: 20811-21452 bp Ori: EAW34309.1 Feature: domain Description: RVT_N Location: 20814-20949 bp Feature: domain Description: RVT_N Location: 208 14-20949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20991-21447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20991-21447 bp Feature: gene Location: 21897-22439 bp Feature: gene Location: 23073-25067 bp Ori: EAW34311.1 Feature: domain Description: protease_PatA Location: 23241-25062 bp Feature: domain Description: protease_PatA Location: 23241-25062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OrfB_Zn_ribbon (pfam07282), HNHc (smart00507), RVT_N (pfam13655), protease_PatA (TIGR03895)

Seq: AAVU01000062.1 Lyngbya sp. PCC 8106 1099428180408, whole genome shotgun sequence (30512 bp)
Overview 1 RT 1: 2255-6912 bp Neighborhood of RT #1 [2255, 6914] RsfS RVT_N RVT-GII GIIM HNHc DUF1230 AnsA2 Feature: gene Location: 2255-2671 bp Ori: EAW33747.1 Feature: domain Description: RsfS Location: 2330-2657 bp Feature: domain Description: RsfS Location: 2330-2657 bp Feature: gene Location: 2964-3149 bp Feature: gene Location: 3517-5250 bp Ori: EAW33749.1 Feature: domain Description: RVT_N Location: 3553-3799 bp Feature: domain Description: RVT_N Location: 3553-379 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3841-4513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3841-4513 bp Feature: domain Description: GIIM Note: maturase Location: 4618-4849 bp Feature: domain Description: GIIM Note: maturase Location: 4618-4849 bp Feature: domain Description: HNHc Note: nucleases Location: 5032-5194 bp Feature: domain Description: HNHc Note: nucleases Location: 5032-519 4 bp Feature: gene Location: 5377-5877 bp Ori: EAW33750.1 Feature: domain Description: DUF1230 Location: 5404-5827 bp Feature: domain Description: DUF1230 Location: 5404-5827 bp Feature: gene Location: 5874-6914 bp Ori: EAW33751.1 Feature: domain Description: AnsA2 Location: 5964-6912 bp Feature: domain Description: AnsA2 Location: 59 64-69 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsfS (pfam02410), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1230 (pfam06799), AnsA2 (COG4448)

Seq: AAVU01000058.1 Lyngbya sp. PCC 8106 1099428180519, whole genome shotgun sequence (33585 bp)
Overview 1 RT 1: 23032-30649 bp Neighborhood of RT #1 [23032, 30657] PP-ATPase TilS InsQ RVT_N RVT-GII GIIM HNHc glgX_debranch Feature: gene Location: 23032-24048 bp Ori: EAW33890.1 Feature: domain Description: PP-ATPase Location: 23119-23689 bp Feature: domain Description: PP-ATPase Location: 23119-23689 bp Feature: domain Description: TilS Location: 23857-23986 bp Feature: domain Description: TilS Location: 23857-23986 bp Feature: gene Location: 24157-25023 bp Ori: EAW33891.1 Feature: domain Description: InsQ Location: 24217-24979 bp Feature: domain Description: InsQ Location: 24217-24979 bp Feature: gene Location: 25461-27203 bp Ori: EAW33892.1 Feature: domain Description: RVT_N Location: 25497-25743 bp Feature: domain Description: RVT_N Location: 25497-25743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25785-26457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25785-26457 bp Feature: domain Description: GIIM Note: maturase Location: 26571-26793 bp Feature: domain Description: GIIM Note: maturase Location: 26571-26793 bp Feature: domain Description: HNHc Note: nucleases Location: 26982-27138 bp Feature: domain Description: HNHc Note: nucleases Location: 26982-27138 bp Feature: gene Location: 27976-28188 bp Feature: gene Location: 28534-30657 bp Ori: EAW33894.1 Feature: domain Description: glgX_debranch Location: 28558-30649 bp Feature: domain Description: glgX_debranch Location: 28558-30649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PP-ATPase (cd01992), TilS (pfam09179), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), glgX_debranch (TIGR02100)

Seq: AAVU01000025.1 Lyngbya sp. PCC 8106 1099428180511, whole genome shotgun sequence (96784 bp)
Overview 1 RT 1: 490-8245 bp 2 RT 2: 43610-46792 bp 3 RT 3: 49273-54829 bp 4 RT 4: 73807-80138 bp 5 RT 5: 84131-90510 bp Neighborhood of RT #1 [490, 8245] DAP2 PilM RVT_N RVT-GII GIIM McrA PilN Neighborhood of RT #2 [43610, 46792] InsQ RVT_N RVT-GII GIIM HTH_23 Neighborhood of RT #3 [49273, 54861] PdxJ InsQ RVT-GII GIIM TRAP_TAXI TIGR03985 Neighborhood of RT #4 [73807, 80138] 7tmA_mAChR RVT_N RVT-GII RVT-GII GIIM McrA HTH_OrfB_IS605 RVT_N RVT-GII McrA Neighborhood of RT #5 [84131, 90510] InsQ InsQ RVT_N RVT-GII TPR TPR COG4995 Feature: gene Location: 490-2394 bp Ori: EAW35781.1 Feature: domain Description: DAP2 Location: 568-2335 bp Feature: domain Description: DAP2 Location: 568-2335 bp Feature: gene Location: 2553-3644 bp Ori: EAW35782.1 Feature: domain Description: PilM Location: 2571-3636 bp Feature: domain Description: PilM Location: 2571-3636 bp Feature: gene Location: 4325-6067 bp Ori: EAW35783.1 Feature: domain Description: RVT_N Location: 4370-4616 bp Feature: domain Description: RVT_N Location: 4370-4616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4658-5336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4658-5336 bp Feature: domain Description: GIIM Note: maturase Location: 5438-5663 bp Feature: domain Description: GIIM Note: maturase Location: 5438-5663 bp Feature: domain Description: McrA Location: 5738-6023 bp Feature: domain Description: McrA Location: 5738-6023 bp Feature: gene Location: 6624-7439 bp Ori: EAW35784.1 Feature: domain Description: PilN Location: 6729-7260 bp Feature: domain Description: PilN Location: 6729-7260 bp Feature: gene Location: 7436-8245 bp Feature: gene Location: 43610-43906 bp Ori: EAW35810.1 Feature: domain Description: InsQ Location: 43613-43844 bp Feature: domain Description: InsQ Location: 43613-43844 bp Feature: gene Location: 44757-45329 bp Ori: EAW35811.1 Feature: domain Description: RVT_N Location: 44937-45174 bp Feature: domain Description: RVT_N Location: 44937-45174 bp Feature: gene Location: 45277-46314 bp Ori: EAW35812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45280-45913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45280-45913 bp Feature: domain Description: GIIM Note: maturase Location: 46012-46243 bp Feature: domain Description: GIIM Note: maturase Location: 46012-46243 bp Feature: gene Location: 46411-46515 bp Ori: EAW35813.1 Feature: domain Description: HTH_23 Location: 46435-46507 bp Feature: domain Description: HTH_23 Location: 46435-46507 bp Feature: gene Location: 46448-46792 bp Feature: gene Location: 49273-49989 bp Ori: EAW35820.1 Feature: domain Description: PdxJ Location: 49282-49984 bp Feature: domain Description: PdxJ Location: 49282-49984 bp Feature: gene Location: 50004-50516 bp Ori: EAW35821.1 Feature: domain Description: InsQ Location: 50103-50511 bp Feature: domain Description: InsQ Location: 50103-50511 bp Feature: gene Location: 50993-51442 bp Ori: EAW35822.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51026-51170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51026-511 70 bp Feature: domain Description: GIIM Note: maturase Location: 51272-51440 bp Feature: domain Description: GIIM Note: maturase Location: 51272-51440 bp Feature: gene Location: 51898-52887 bp Ori: EAW35823.1 Feature: domain Description: TRAP_TAXI Location: 51919-52861 bp Feature: domain Description: TRAP_TAXI Location: 51919-52861 bp Feature: gene Location: 53374-54861 bp Ori: EAW35824.1 Feature: domain Description: TIGR03985 Location: 54067-54829 bp Feature: domain Description: TIGR03985 Location: 54067-54829 bp Feature: gene Location: 73807-75087 bp Ori: EAW35848.1 Feature: domain Description: 7tmA_mAChR Location: 73891-75067 bp Feature: domain Description: 7tmA_mAChR Location: 73891-75067 bp Feature: gene Location: 75112-75225 bp Feature: gene Location: 75833-76702 bp Ori: EAW35850.1 Feature: domain Description: RVT_N Location: 75866-76100 bp Feature: domain Description: RVT_N Location: 75866-76100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76151-76697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76151-76697 bp Feature: gene Location: 76727-77569 bp Ori: EAW35851.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76733-76820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76733-76820 bp Feature: domain Description: GIIM Note: maturase Location: 76922-77153 bp Feature: domain Description: GIIM Note: maturase Location: 76922-77153 bp Feature: domain Description: McrA Location: 77240-77522 bp Feature: domain Description: McrA Location: 77240-77522 bp Feature: gene Location: 77566-77868 bp Ori: EAW35852.1 Feature: domain Description: HTH_OrfB_IS605 Location: 77632-77734 bp Feature: domain Description: HTH_OrfB_IS605 Location: 77632-77734 bp Feature: gene Location: 77916-78584 bp Ori: EAW35853.1 Feature: domain Description: RVT_N Location: 78192-78429 bp Feature: domain Description: RVT_N Location: 78192-78429 bp Feature: gene Location: 78532-79209 bp Ori: EAW35854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78535-79126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78535-79126 bp Feature: gene Location: 79416-79946 bp Ori: EAW35855.1 Feature: domain Description: McrA Location: 79587-79854 bp Feature: domain Description: McrA Location: 79587-79854 bp Feature: gene Location: 79983-80138 bp Feature: gene Location: 84131-84700 bp Ori: EAW35862.1 Feature: domain Description: InsQ Location: 84134-84662 bp Feature: domain Description: InsQ Location: 84134-84662 bp Feature: gene Location: 84711-85115 bp Ori: EAW35863.1 Feature: domain Description: InsQ Location: 84717-85008 bp Feature: domain Description: InsQ Location: 84717-85008 bp Feature: gene Location: 85112-86140 bp Ori: EAW35864.1 Feature: domain Description: RVT_N Location: 85151-85397 bp Feature: domain Description: RVT_N Location: 85151-85397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85439-86081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85439-86081 bp Feature: gene Location: 87424-90189 bp Ori: EAW35865.1 Feature: domain Description: TPR Location: 87604-87919 bp Feature: domain Description: TPR Location: 87604-87919 bp Feature: domain Description: TPR Location: 88711-88942 bp Feature: domain Description: TPR Location: 88711 -88942 bp Feature: domain Description: COG4995 Location: 88963-90184 bp Feature: domain Description: COG4995 Location: 88963-90184 bp Feature: gene Location: 90262-90510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DAP2 (COG1506), PilM (pfam07419), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PilN (pfam05137), InsQ (COG0675), HTH_23 (pfam13384), PdxJ (pfam03740)
TRAP_TAXI (TIGR02122), TIGR03985 (CRISPR-associated protein, TIGR03985 family), 7tmA_mAChR (cd15049), HTH_OrfB_IS605 (pfam12323), TPR (smart00028), COG4995 (Uncharacterized conserved protein, contains CHAT domain )

Seq: AAVU01000019.1 Lyngbya sp. PCC 8106 1099428180549, whole genome shotgun sequence (130196 bp)
Overview 1 RT 1: 69526-73086 bp Neighborhood of RT #1 [69526, 73202] SH3_3 RVT-GII GIIM McrA RVT_N InsQ Feature: gene Location: 69526-70200 bp Ori: EAW36401.1 Feature: domain Description: SH3_3 Location: 69565-69712 bp Feature: domain Description: SH3_3 Location: 69565-69712 bp Feature: gene Location: 70246-70455 bp Feature: gene Location: 70459-71835 bp Ori: EAW36403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70498-71056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70498-71056 bp Feature: domain Description: GIIM Note: maturase Location: 71155-71386 bp Feature: domain Description: GIIM Note: maturase Location: 71155-71386 bp Feature: domain Description: McrA Location: 71476-71743 bp Feature: domain Description: McrA Location: 71476-71743 bp Feature: gene Location: 71814-72485 bp Ori: EAW36404.1 Feature: domain Description: RVT_N Location: 72090-72327 bp Feature: domain Description: RVT_N Location: 72090-72327 bp Feature: gene Location: 72792-73202 bp Ori: EAW36405.1 Feature: domain Description: InsQ Location: 72795-73086 bp Feature: domain Description: InsQ Location: 72795-73086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), InsQ (COG0675)

Seq: AAVU01000035.1 Lyngbya sp. PCC 8106 1099428180518, whole genome shotgun sequence (78593 bp)
Overview 1 RT 1: 28689-36362 bp Neighborhood of RT #1 [28689, 36517] InsQ RVT_N RVT-GII GIIM HNHc IscA TPR Feature: gene Location: 28689-29840 bp Ori: EAW35018.1 Feature: domain Description: InsQ Location: 28698-29802 bp Feature: domain Description: InsQ Location: 28698-29802 bp Feature: gene Location: 30014-31660 bp Feature: gene Location: 32457-34187 bp Ori: EAW35020.1 Feature: domain Description: RVT_N Location: 32493-32739 bp Feature: domain Description: RVT_N Location: 32493-32739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32778-33450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32778-33450 bp Feature: domain Description: GIIM Note: maturase Location: 33555-33786 bp Feature: domain Description: GIIM Note: maturase Location: 33555-33786 bp Feature: domain Description: HNHc Note: nucleases Location: 33975-34131 bp Feature: domain Description: HNHc Note: nucleases Location: 33975-3413 1 bp Feature: gene Location: 35443-35799 bp Ori: EAW35021.1 Feature: domain Description: IscA Location: 35470-35794 bp Feature: domain Description: IscA Location: 35470-35794 bp Feature: gene Location: 36086-36517 bp Ori: EAW35022.1 Feature: domain Description: TPR Location: 36143-36362 bp Feature: domain Description: TPR Location: 36143-36362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), IscA (TIGR02011), TPR (smart00028)

Seq: AAVU01000023.1 Lyngbya sp. PCC 8106 1099428180545, whole genome shotgun sequence (100835 bp)
Overview 1 RT 1: 94461-100835 bp Neighborhood of RT #1 [94461, 100835] Relaxase RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 94461-94769 bp Feature: gene Location: 94821-96074 bp Ori: EAW36043.1 Feature: domain Description: Relaxase Location: 94827-95055 bp Feature: domain Description: Relaxase Location: 94827-95055 bp Feature: gene Location: 96302-97795 bp Ori: EAW36044.1 Feature: domain Description: RVT_N Location: 96326-96572 bp Feature: domain Description: RVT_N Location: 96326-96572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96623-97049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96623-97049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97049-97217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97049-97217 bp Feature: domain Description: McrA Location: 97451-97772 bp Feature: domain Description: McrA Location: 97451-97772 bp Feature: gene Location: 99261-99572 bp Feature: gene Location: 100360-100835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: AAVU01000067.1 Lyngbya sp. PCC 8106 1099428180498, whole genome shotgun sequence (25666 bp)
Overview 1 RT 1: 6222-10447 bp Neighborhood of RT #1 [6222, 10447] McrA RVT_N RVT-GII Feature: gene Location: 6222-6578 bp Feature: gene Location: 6915-7301 bp Ori: EAW33630.1 Feature: domain Description: McrA Location: 7011-7254 bp Feature: domain Description: McrA Location: 7011-7254 bp Feature: gene Location: 7481-8641 bp Ori: EAW33631.1 Feature: domain Description: RVT_N Location: 7517-7763 bp Feature: domain Description: RVT_N Location: 7517-7763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7805-8471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7805-8471 bp Feature: gene Location: 9306-9563 bp Feature: gene Location: 9599-10447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), RVT_N (pfam13655), RVT-GII

Seq: AAVU01000027.1 Lyngbya sp. PCC 8106 1099428180503, whole genome shotgun sequence (91896 bp)
Overview 1 RT 1: 47389-54571 bp Neighborhood of RT #1 [47389, 54573] CHASE2 PRK10060 PRK00048 RVT_N RVT-GII GIIM HNHc NblA Feature: gene Location: 47389-49959 bp Ori: EAW35660.1 Feature: domain Description: CHASE2 Location: 47494-48649 bp Feature: domain Description: CHASE2 Location: 47494-48649 bp Feature: domain Description: PRK10060 Location: 48667-49921 bp Feature: domain Description: PRK10060 Location: 48667-49921 bp Feature: gene Location: 50160-50987 bp Ori: EAW35661.1 Feature: domain Description: PRK00048 Location: 50181-50985 bp Feature: domain Description: PRK00048 Location: 50181-50985 bp Feature: gene Location: 51680-53410 bp Ori: EAW35662.1 Feature: domain Description: RVT_N Location: 51716-51962 bp Feature: domain Description: RVT_N Location: 51716 -51962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52001-52673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52001-52673 bp Feature: domain Description: GIIM Note: maturase Location: 52778-53009 bp Feature: domain Description: GIIM Note: maturase Location: 52778-53009 bp Feature: domain Description: HNHc Note: nucleases Location: 53198-53354 bp Feature: domain Description: HNHc Note: nucleases Location: 53198-53354 bp Feature: gene Location: 53600-54286 bp Feature: gene Location: 54409-54573 bp Ori: EAW35664.1 Feature: domain Description: NblA Location: 54430-54571 bp Feature: domain Description: NblA Location: 54430-54571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHASE2 (smart01080), PRK10060 (cyclic di-GMP phosphodiesterase), PRK00048 (dihydrodipicolinate reductase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), NblA (pfam04485)

Seq: AAVU01000055.1 Lyngbya sp. PCC 8106 1099428180520, whole genome shotgun sequence (37746 bp)
Overview 1 RT 1: 24656-33201 bp Neighborhood of RT #1 [24656, 33201] rSAM_GlyRichRpt SseA RVT_N RVT-GII GIIM HNHc P_ylase Feature: gene Location: 24656-25873 bp Ori: EAW33976.1 Feature: domain Description: rSAM_GlyRichRpt Location: 24758-25844 bp Feature: domain Description: rSAM_GlyRichRpt Location: 24758-25844 bp Feature: gene Location: 26022-27023 bp Ori: EAW33977.1 Feature: domain Description: SseA Location: 26205-26994 bp Feature: domain Description: SseA Location: 26205-26994 bp Feature: gene Location: 27948-29684 bp Ori: EAW33978.1 Feature: domain Description: RVT_N Location: 27984-28230 bp Feature: domain Description: RVT_N Location: 27984-28230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28272-28938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28272-28938 bp Feature: domain Description: GIIM Note: maturase Location: 29052-29274 bp Feature: domain Description: GIIM Note: maturase Location: 29052-29274 bp Feature: domain Description: HNHc Note: nucleases Location: 29463-29619 bp Feature: domain Description: HNHc Note: nucleases Location: 29463-29619 bp Feature: gene Location: 29937-32474 bp Ori: EAW33979.1 Feature: domain Description: P_ylase Location: 30036-32409 bp Feature: domain Description: P_ylase Location: 30036-32409 bp Feature: gene Location: 32569-33201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rSAM_GlyRichRpt (TIGR04261), SseA (COG2897), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), P_ylase (TIGR02093)

Seq: AAVU01000051.1 Lyngbya sp. PCC 8106 1099428180499, whole genome shotgun sequence (47490 bp)
Overview 1 RT 1: 1561-6948 bp Neighborhood of RT #1 [1561, 7004] InsQ RVT_N RVT-GII GIIM McrA InsQ InsQ Feature: gene Location: 1561-1659 bp Feature: gene Location: 1795-2571 bp Ori: EAW34107.1 Feature: domain Description: InsQ Location: 1798-2446 bp Feature: domain Description: InsQ Location: 1798-2446 bp Feature: gene Location: 2694-4625 bp Ori: EAW34108.1 Feature: domain Description: RVT_N Location: 2811-3057 bp Feature: domain Description: RVT_N Location: 2811-3057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3099-3795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3099-3795 bp Feature: domain Description: GIIM Note: maturase Location: 3912-4143 bp Feature: domain Description: GIIM Note: maturase Location: 3912-4143 bp Feature: domain Description: McrA Location: 4236-4500 bp Feature: domain Description: McrA Location: 4236-4500 bp Feature: gene Location: 5525-6058 bp Ori: EAW34109.1 Feature: domain Description: InsQ Location: 5555-6047 bp Feature: domain Description: InsQ Location: 5555-6047 bp Feature: gene Location: 6450-7004 bp Ori: EAW34110.1 Feature: domain Description: InsQ Location: 6480-6948 bp Feature: domain Description: InsQ Location: 6480-6948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AAVU01000038.1 Lyngbya sp. PCC 8106 1099428180537, whole genome shotgun sequence (75179 bp)
Overview 1 RT 1: 9926-17211 bp Neighborhood of RT #1 [9926, 18557] DUF3007 NdhL RVT_N RVT-GII GIIM HNHc InsQ N6_Mtase Feature: gene Location: 9926-10252 bp Ori: EAW34829.1 Feature: domain Description: DUF3007 Location: 9929-10214 bp Feature: domain Description: DUF3007 Location: 9929-10214 bp Feature: gene Location: 10252-10485 bp Ori: EAW34830.1 Feature: domain Description: NdhL Location: 10267-10474 bp Feature: domain Description: NdhL Location: 10267-10474 bp Feature: gene Location: 12012-13712 bp Ori: EAW34831.1 Feature: domain Description: RVT_N Location: 12066-12312 bp Feature: domain Description: RVT_N Location: 12066-12312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12360-13011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12360-13011 bp Feature: domain Description: GIIM Note: maturase Location: 13062-13296 bp Feature: domain Description: GIIM Note: maturase Location: 13062-13296 bp Feature: domain Description: HNHc Note: nucleases Location: 13524-13680 bp Feature: domain Description: HNHc Note: nucleases Location: 13524-13680 bp Feature: gene Location: 13721-15007 bp Ori: EAW34832.1 Feature: domain Description: InsQ Location: 13829-14828 bp Feature: domain Description: InsQ Location: 13829-14828 bp Feature: gene Location: 15420-18557 bp Ori: EAW34833.1 Feature: domain Description: N6_Mtase Location: 16440-17211 bp Feature: domain Description: N6_Mtase Location: 16440-17211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3007 (pfam11460), NdhL (pfam10716), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675), N6_Mtase (pfam02384)

Seq: AAVU01000028.1 Lyngbya sp. PCC 8106 1099428180529, whole genome shotgun sequence (89883 bp)
Overview 1 RT 1: 59738-65222 bp Neighborhood of RT #1 [59738, 65242] InsQ Y1_Tnp RVT_N RVT-GII YkfC McrA InsQ InsQ Feature: gene Location: 59738-60061 bp Ori: EAW35587.1 Feature: domain Description: InsQ Location: 59741-59969 bp Feature: domain Description: InsQ Location: 59741-59969 bp Feature: gene Location: 60144-60554 bp Ori: EAW35588.1 Feature: domain Description: Y1_Tnp Location: 60180-60540 bp Feature: domain Description: Y1_Tnp Location: 60180-60540 bp Feature: gene Location: 61216-63066 bp Ori: EAW35589.1 Feature: domain Description: RVT_N Location: 61294-61540 bp Feature: domain Description: RVT_N Location: 61294-61540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61582-62278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61582-62278 bp Feature: domain Description: YkfC Location: 62437-62641 bp Feature: domain Description: YkfC Location: 62437-62641 bp Feature: domain Description: McrA Location: 62680-62947 bp Feature: domain Description: McrA Location: 62680-62947 bp Feature: gene Location: 63129-64268 bp Ori: EAW35590.1 Feature: domain Description: InsQ Location: 63207-64176 bp Feature: domain Description: InsQ Location: 6320 7-64176 bp Feature: gene Location: 64292-65242 bp Ori: EAW35591.1 Feature: domain Description: InsQ Location: 64370-65222 bp Feature: domain Description: InsQ Location: 64370-65222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), Y1_Tnp (pfam01797), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), McrA (COG4058)