myRT

myRT report for GCA_000169475.1_ASM16947v1

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Seq: AAYG02000002.1 [Ruminococcus] gnavus ATCC 29149 R_gnavus-1.0.1_Cont13.1, whole genome shotgun sequence (100795 bp)
Overview 1 RT 1: 90998-95789 bp Neighborhood of RT #1 [90998, 95821] Tail_P2_I DUF3751 RVT-DGRs bZIP_XBP1 Phage_XkdX Feature: gene Location: 90998-91828 bp Feature: domain Description: Tail_P2_I Location: 91094-91472 bp Feature: domain Description: Tail_P2_I Location: 91 094-91 472 bp Feature: gene Location: 91841-93718 bp Feature: domain Description: DUF3751 Location: 91868-92294 bp Feature: domain Description: DUF3751 Location: 91 868-92294 bp Feature: gene Location: 94179-95324 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94428-95154 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94428-951 54 bp Feature: gene Location: 95314-95682 bp Feature: domain Description: bZIP_XBP1 Location: 95545-95632 bp Feature: domain Description: bZIP_XBP1 Location: 95545-95632 bp Feature: gene Location: 95675-95821 bp Feature: domain Description: Phage_XkdX Location: 95681-95789 bp Feature: domain Description: Phage_XkdX Location: 95681 -95789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tail_P2_I (pfam09684), DUF3751 (pfam12571), RVT-DGRs, bZIP_XBP1 (cd14691), Phage_XkdX (pfam09693)

Seq: AAYG02000006.1 [Ruminococcus] gnavus ATCC 29149 R_gnavus-1.0.1_Cont31, whole genome shotgun sequence (124664 bp)
Overview 1 RT 1: 56568-69275 bp 2 RT 2: 92052-96269 bp Neighborhood of RT #1 [56568, 69448] DUF3848 DUF3849 KOG1000 RVT-GII Intron_maturas2 HNHc YtxK COG4646 YdiL Neighborhood of RT #2 [92052, 96301] HTH_XRE DNA_ligase_A_N RVT-GII MATE_MepA_like Feature: gene Location: 56568-57386 bp Feature: domain Description: DUF3848 Location: 56586-56865 bp Feature: domain Description: DUF3848 Location: 56586-56865 bp Feature: domain Description: DUF3849 Location: 56901-57264 bp Feature: domain Description: DUF3849 Location: 56901-572 64 bp Feature: gene Location: 57388-58827 bp Feature: domain Description: KOG1000 Location: 57823-58027 bp Feature: domain Description: KOG1000 Location: 5782 3-5802 7 bp Feature: gene Location: 58980-60758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59241-60033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592 41-60033 bp Feature: domain Description: Intron_maturas2 Location: 60138-60354 bp Feature: domain Description: Intron_maturas2 Location: 60138-60354 bp Feature: domain Description: HNHc Note: nucleases Location: 60534-60720 bp Feature: domain Description: HNHc Note: nucleases Location: 60534-6072 0 bp Feature: gene Location: 61258-68574 bp Feature: domain Description: YtxK Location: 65284-65959 bp Feature: domain Description: YtxK Location: 652 84-65959 bp Feature: domain Description: COG4646 Location: 66028-68443 bp Feature: domain Description: COG4646 Location: 6602 8-68443 bp Feature: gene Location: 68657-69448 bp Feature: domain Description: YdiL Location: 68669-69275 bp Feature: domain Description: YdiL Location: 68669-692 75 bp Feature: gene Location: 92052-92234 bp Feature: gene Location: 92233-93039 bp Feature: domain Description: HTH_XRE Location: 92260-92431 bp Feature: domain Description: HTH_XRE Location: 92 2 60-92 431 bp Feature: domain Description: DNA_ligase_A_N Location: 92764-93010 bp Feature: domain Description: DNA_ligase_A_N Location: 92 764-93010 bp Feature: gene Location: 93214-94626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93586-94276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93586-942 76 bp Feature: gene Location: 94599-94778 bp Feature: gene Location: 95000-96301 bp Feature: domain Description: MATE_MepA_like Location: 95012-96269 bp Feature: domain Description: MATE_MepA_like Location: 95012 -962 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3848 (pfam12959), DUF3849 (pfam12960), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), YdiL (COG1266), HTH_XRE (smart00530)
DNA_ligase_A_N (pfam04675), MATE_MepA_like (cd13143)

Seq: AAYG02000016.1 [Ruminococcus] gnavus ATCC 29149 R_gnavus-1.0.1_Cont46, whole genome shotgun sequence (162619 bp)
Overview 1 RT 1: 56684-60211 bp Neighborhood of RT #1 [56684, 60300] PHA00653 Avd_like RVT-DGRs RVT-DGRs Phage_holin_4_1 Feature: gene Location: 56684-57826 bp Feature: domain Description: PHA00653 Location: 56807-57824 bp Feature: domain Description: PHA00653 Location: 56807-57824 bp Feature: gene Location: 57867-58223 bp Feature: domain Description: Avd_like Location: 57897-58200 bp Feature: domain Description: Avd_like Location: 57897-58200 bp Feature: gene Location: 58550-58951 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58778-58946 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58778-58946 bp Feature: gene Location: 59126-59611 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59135-59480 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5913 5-59480 bp Feature: gene Location: 59636-59815 bp Feature: gene Location: 59812-60300 bp Feature: domain Description: Phage_holin_4_1 Location: 59851-60211 bp Feature: domain Description: Phage_holin_4_1 Location: 59851-60211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)