myRT

myRT report for GCA_000169995.1_ASM16999v1

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Seq: AAZW01000008.1 Vibrionales bacterium SWAT-3 1101732140694, whole genome shotgun sequence (142982 bp)
Overview 1 RT 1: 72309-77152 bp Neighborhood of RT #1 [72309, 77152] adh_III_F_hyde EmrE RVT_N RVT-GII GIIM recX Feature: gene Location: 72309-73457 bp Ori: EDK29619.1 Feature: domain Description: adh_III_F_hyde Location: 72351-73449 bp Feature: domain Description: adh_III_F_hyde Location: 72351 -73449 bp Feature: gene Location: 73779-74123 bp Ori: EDK29620.1 Feature: domain Description: EmrE Location: 73806-74106 bp Feature: domain Description: EmrE Location: 73806-741 06 bp Feature: gene Location: 74251-75882 bp Ori: EDK29621.1 Feature: domain Description: RVT_N Location: 74458-74701 bp Feature: domain Description: RVT_N Location: 74458-74701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74746-75373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74746-75373 bp Feature: domain Description: GIIM Note: maturase Location: 75433-75658 bp Feature: domain Description: GIIM Note: maturase Location: 75433-75658 bp Feature: gene Location: 76476-76907 bp Ori: EDK29622.1 Feature: domain Description: recX Location: 76485-76893 bp Feature: domain Description: recX Location: 76485-76893 bp Feature: gene Location: 76928-77152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT adh_III_F_hyde (TIGR02818), EmrE (pfam13536), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), recX (PRK14137)

Seq: AAZW01000022.1 Vibrionales bacterium SWAT-3 1101732140688, whole genome shotgun sequence (77250 bp)
Overview 1 RT 1: 24906-30571 bp Neighborhood of RT #1 [24906, 30571] INT_Rci_Hp1_C RVT_N RVT-GII GIIM Feature: gene Location: 24906-26912 bp Ori: EDK28334.1 Feature: domain Description: INT_Rci_Hp1_C Location: 26205-26340 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2 62 05-2 6340 bp Feature: gene Location: 26909-27367 bp Feature: gene Location: 28005-29477 bp Ori: EDK28336.1 Feature: domain Description: RVT_N Location: 28053-28296 bp Feature: domain Description: RVT_N Location: 2 8053-2 82 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28341-28968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8341-2 8968 bp Feature: domain Description: GIIM Note: maturase Location: 29028-29253 bp Feature: domain Description: GIIM Note: maturase Location: 2 902 8-2 92 53 bp Feature: gene Location: 30224-30340 bp Feature: gene Location: 30458-30571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: AAZW01000015.1 Vibrionales bacterium SWAT-3 1101732140706, whole genome shotgun sequence (103145 bp)
Overview 1 RT 1: 4398-11411 bp 2 RT 2: 99166-103128 bp Neighborhood of RT #1 [4398, 11411] am_tr_V_VC1184 COG4340 RVT_N RVT-GII GIIM Neighborhood of RT #2 [99166, 103145] yhaH RVT_N RVT-GII GIIM TnpB_IS66 Feature: gene Location: 4398-5633 bp Ori: EDK28811.1 Feature: domain Description: am_tr_V_VC1184 Location: 4407-5607 bp Feature: domain Description: am_tr_V_VC1184 Location: 4407-5607 bp Feature: gene Location: 5617-6273 bp Ori: EDK28812.1 Feature: domain Description: COG4340 Location: 5620-6271 bp Feature: domain Description: COG43 40 Location: 5620-6271 bp Feature: gene Location: 7088-8719 bp Ori: EDK28813.1 Feature: domain Description: RVT_N Location: 7295-7538 bp Feature: domain Description: RVT_N Location: 7295-753 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7583-8210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7583 -8210 bp Feature: domain Description: GIIM Note: maturase Location: 8270-8495 bp Feature: domain Description: GIIM Note: maturase Location: 8270-8495 bp Feature: gene Location: 9296-10795 bp Feature: gene Location: 10812-11411 bp Feature: gene Location: 99166-99429 bp Ori: EDK28889.1 Feature: domain Description: yhaH Location: 99205-99382 bp Feature: domain Description: yhaH Location: 99205-993 82 bp Feature: gene Location: 99426-99953 bp Feature: gene Location: 100153-101625 bp Ori: EDK28891.1 Feature: domain Description: RVT_N Location: 100201-100444 bp Feature: domain Description: RVT_N Location: 100201-100444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100489-101116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100489-101116 bp Feature: domain Description: GIIM Note: maturase Location: 101176-101401 bp Feature: domain Description: GIIM Note: maturase Location: 101176-101401 bp Feature: gene Location: 102538-102891 bp Feature: gene Location: 102888-103145 bp Ori: EDK28893.1 Feature: domain Description: TnpB_IS66 Location: 102918-103128 bp Feature: domain Description: TnpB_IS66 Location: 102918-103 128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT am_tr_V_VC1184 (TIGR01976), COG4340 (Predicted dioxygenase, 2-oxoglutarate and Fe-dependent (2OG-Fe) dioxygenase superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), yhaH (COG3152), TnpB_IS66 (pfam05717)

Seq: AAZW01000044.1 Vibrionales bacterium SWAT-3 1101732140699, whole genome shotgun sequence (42677 bp)
Overview 1 RT 1: 1368-5364 bp Neighborhood of RT #1 [1368, 5390] IS285 COG3547 RVT-GII RVT-GII RVT_N DUF3387 Feature: gene Location: 1368-2081 bp Ori: EDK27178.1 Feature: domain Description: IS285 Location: 1407-2067 bp Feature: domain Description: IS285 Location: 14 07-2067 bp Feature: gene Location: 2332-3366 bp Ori: EDK27179.1 Feature: domain Description: COG3547 Location: 2350-3316 bp Feature: domain Description: COG354 7 Location: 2350-3316 bp Feature: gene Location: 3619-3789 bp Ori: EDK27180.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3628-3778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3628-3778 bp Feature: gene Location: 3825-4130 bp Ori: EDK27181.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3828-4125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3828-4 125 bp Feature: gene Location: 4156-4674 bp Ori: EDK27182.1 Feature: domain Description: RVT_N Location: 4363-4612 bp Feature: domain Description: RVT_N Location: 4 363-4 612 bp Feature: gene Location: 5082-5390 bp Ori: EDK27183.1 Feature: domain Description: DUF3387 Location: 5124-5364 bp Feature: domain Description: DUF3387 Location: 5124 -5364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), COG3547 (Transposase ), RVT-GII, RVT_N (pfam13655), DUF3387 (pfam11867)

Seq: AAZW01000003.1 Vibrionales bacterium SWAT-3 1101732140693, whole genome shotgun sequence (276483 bp)
Overview 1 RT 1: 134775-141156 bp Neighborhood of RT #1 [134775, 141167] DppF GsiA RVT_N RVT-GII GIIM MATE_DinF_like HTH_ARAC GyrI-like Feature: gene Location: 134775-135626 bp Ori: EDK30418.1 Feature: domain Description: DppF Location: 134868-135609 bp Feature: domain Description: DppF Location: 134868-135 609 bp Feature: gene Location: 135623-136381 bp Ori: EDK30419.1 Feature: domain Description: GsiA Location: 135632-136349 bp Feature: domain Description: GsiA Location: 135 632-136349 bp Feature: gene Location: 137078-138709 bp Ori: EDK30420.1 Feature: domain Description: RVT_N Location: 137285-137528 bp Feature: domain Description: RVT_N Location: 137285 -1375 28 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137573-138200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375 73-138200 bp Feature: domain Description: GIIM Note: maturase Location: 138260-138485 bp Feature: domain Description: GIIM Note: maturase Location: 138260-138485 bp Feature: gene Location: 138780-140087 bp Ori: EDK30421.1 Feature: domain Description: MATE_DinF_like Location: 138792-140046 bp Feature: domain Description: MATE_DinF_like Location: 138792-140046 bp Feature: gene Location: 140298-141167 bp Ori: EDK30422.1 Feature: domain Description: HTH_ARAC Location: 140370-140619 bp Feature: domain Description: HTH_ARAC Location: 140370-140619 bp Feature: domain Description: GyrI-like Location: 140712-141156 bp Feature: domain Description: GyrI-like Location: 140712-14115 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppF (COG1124), GsiA (COG1123), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MATE_DinF_like (cd13136), HTH_ARAC (smart00342), GyrI-like (pfam06445)