myRT

myRT report for GCA_000170895.1_ASM17089v1

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Seq: ABCS01000007.1 Plesiocystis pacifica SIR-1 1103186006290, whole genome shotgun sequence (170347 bp)
Overview 1 RT 1: 23973-31334 bp Neighborhood of RT #1 [23973, 31648] PRK05755 His_Phos_1 RVT-GII GIIM PRK08762 zinc_ribbon_4 Feature: gene Location: 23973-26669 bp Feature: domain Description: PRK05755 Location: 23988-26667 bp Feature: domain Description: PRK05755 Location: 23988-26667 bp Feature: gene Location: 26686-27378 bp Feature: domain Description: His_Phos_1 Location: 26791-27364 bp Feature: domain Description: His_Phos_1 Location: 26791 -27364 bp Feature: gene Location: 27830-28975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27938-28550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27938-28550 bp Feature: domain Description: GIIM Note: maturase Location: 28607-28826 bp Feature: domain Description: GIIM Note: maturase Location: 28607-28826 bp Feature: gene Location: 29841-31010 bp Feature: domain Description: PRK08762 Location: 29886-31002 bp Feature: domain Description: PRK08762 Location: 29886-31 002 bp Feature: gene Location: 31211-31648 bp Feature: domain Description: zinc_ribbon_4 Location: 31250-31334 bp Feature: domain Description: zinc_ribbon_4 Location: 31 250-31 334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05755 (DNA polymerase I; Provisional), His_Phos_1 (pfam00300), RVT-GII, GIIM (pfam08388), PRK08762 (molybdopterin-synthase adenylyltransferase MoeB), zinc_ribbon_4 (pfam13717)

Seq: ABCS01000004.1 Plesiocystis pacifica SIR-1 1103186006336, whole genome shotgun sequence (184847 bp)
Overview 1 RT 1: 69299-76735 bp Neighborhood of RT #1 [69299, 76735] M48_Ste24p_like RVT-GII GIIM Feature: gene Location: 69299-69952 bp Feature: gene Location: 69955-72681 bp Feature: domain Description: M48_Ste24p_like Location: 72121-72487 bp Feature: domain Description: M48_Ste2 4p_like Location: 72 12 1-72 487 bp Feature: gene Location: 73495-74784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73780-74395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73780-74395 bp Feature: domain Description: GIIM Note: maturase Location: 74449-74611 bp Feature: domain Description: GIIM Note: maturase Location: 74449-74611 bp Feature: gene Location: 74673-75260 bp Feature: gene Location: 75959-76735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M48_Ste24p_like (cd07328), RVT-GII, GIIM (pfam08388)

Seq: ABCS01000031.1 Plesiocystis pacifica SIR-1 1103186006204, whole genome shotgun sequence (89137 bp)
Overview 1 RT 1: 70658-78006 bp Neighborhood of RT #1 [70658, 78020] PRK03612 RVT-GII Tra5 InsE RVT-GII GIIM GadA SUA5 Feature: gene Location: 70658-70903 bp Feature: gene Location: 71081-71896 bp Feature: domain Description: PRK03612 Location: 71096-71840 bp Feature: domain Description: PRK03 612 Location: 71096-71840 bp Feature: gene Location: 72461-73351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72758-73286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72758-73 286 bp Feature: gene Location: 73293-73940 bp Feature: domain Description: Tra5 Location: 73296-73746 bp Feature: domain Description: Tra5 Location: 73 296-73 746 bp Feature: gene Location: 74314-74670 bp Feature: domain Description: InsE Location: 74332-74623 bp Feature: domain Description: InsE Location: 743 3 2-74623 bp Feature: gene Location: 74805-75332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74811-74910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74811-74910 bp Feature: domain Description: GIIM Note: maturase Location: 74964-75177 bp Feature: domain Description: GIIM Note: maturase Location: 74964-75177 bp Feature: gene Location: 75790-77232 bp Feature: domain Description: GadA Location: 75844-76900 bp Feature: domain Description: GadA Location: 75844-76900 bp Feature: gene Location: 77367-78020 bp Feature: domain Description: SUA5 Location: 77376-78006 bp Feature: domain Description: SUA5 Location: 773 76-78006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03612 (polyamine aminopropyltransferase), RVT-GII, Tra5 (COG2801), InsE (COG2963), GIIM (pfam08388), GadA (COG0076), SUA5 (pfam03481)

Seq: ABCS01000226.1 Plesiocystis pacifica SIR-1 1103186006076, whole genome shotgun sequence (1631 bp)
Overview 1 RT 1: 193-1279 bp Neighborhood of RT #1 [193, 1506] RVT-Retrons Feature: gene Location: 193-1506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 658-1279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 658-1279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: ABCS01000119.1 Plesiocystis pacifica SIR-1 1103186006206, whole genome shotgun sequence (28742 bp)
Overview 1 RT 1: 1-8272 bp Neighborhood of RT #1 [1, 8272] RpoE CE4_HpPgdA_like CE4_HpPgdA_like RVT-GII Feature: gene Location: 1-558 bp Feature: domain Description: RpoE Location: 28-523 bp Feature: domain Description: RpoE Location: 28-5 23 bp Feature: gene Location: 581-1648 bp Feature: domain Description: CE4_HpPgdA_like Location: 1046-1358 bp Feature: domain Description: CE4_HpPgdA_like Location: 1046-135 8 bp Feature: domain Description: CE4_HpPgdA_like Location: 1478-1571 bp Feature: domain Description: CE4_HpPgdA_like Location: 1478-15 71 bp Feature: gene Location: 2510-3016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2516-2879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 16-2879 bp Feature: gene Location: 3353-7345 bp Feature: gene Location: 7358-8272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-GII, CE4_HpPgdA_like (cd10938)

Seq: ABCS01000168.1 Plesiocystis pacifica SIR-1 1103186006043, whole genome shotgun sequence (12171 bp)
Overview 1 RT 1: 6157-11833 bp Neighborhood of RT #1 [6157, 12006] PRK06635 Peptidase_M17 HEAT_2 RVT-Retrons LRR_AMN1 Feature: gene Location: 6157-7386 bp Feature: domain Description: PRK06635 Location: 6172-7366 bp Feature: domain Description: PRK06 6 35 Location: 6 172-736 6 bp Feature: gene Location: 7470-9053 bp Feature: domain Description: Peptidase_M17 Location: 7659-9018 bp Feature: domain Description: Peptidase_M17 Location: 76 59-9018 bp Feature: gene Location: 9289-10779 bp Feature: domain Description: HEAT_2 Location: 9427-9592 bp Feature: domain Description: HEAT_2 Location: 9427-9592 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9880-10501 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9880-10501 bp Feature: gene Location: 10969-12006 bp Feature: domain Description: LRR_AMN1 Location: 11503-11833 bp Feature: domain Description: LRR_AMN1 Location: 11503-11833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_AMN1 (sd00034), PRK06635 (aspartate kinase; Reviewed), Peptidase_M17 (pfam00883), HEAT_2 (pfam13646), RVT-Retrons