myRT

myRT report for GCA_000171775.1_ASM17177v1

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Seq: ABGO01000550.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221704947, whole genome shotgun sequence (2822 bp)
Overview 1 RT 1: 1-2625 bp Neighborhood of RT #1 [1, 2666] RVT-GII CsrA Feature: gene Location: 1-360 bp Feature: gene Location: 586-1416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-1105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-1 1 05 bp Feature: gene Location: 1504-2277 bp Feature: gene Location: 2469-2666 bp Feature: domain Description: CsrA Location: 2472-2625 bp Feature: domain Description: CsrA Location: 2472-2625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsrA (pfam02599), RVT-GII

Seq: ABGO01000198.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221710203, whole genome shotgun sequence (15989 bp)
Overview 1 RT 1: 62-11794 bp Neighborhood of RT #1 [62, 11862] Nnr1 RVT-Retrons SWIM WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 62-448 bp Feature: domain Description: Nnr1 Location: 134-383 bp Feature: domain Description: Nnr1 Location: 134-383 bp Feature: gene Location: 553-1890 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1027-1648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102 7-1648 bp Feature: gene Location: 2908-4767 bp Feature: domain Description: SWIM Location: 4372-4492 bp Feature: domain Description: SWIM Location: 4372 -4492 bp Feature: gene Location: 4921-11862 bp Feature: domain Description: WD40 Location: 5692-5974 bp Feature: domain Description: WD40 Location: 5692 -5974 bp Feature: domain Description: WD40 Location: 6031-6322 bp Feature: domain Description: WD40 Location: 6031-632 2 bp Feature: domain Description: HEAT_2 Location: 6409-6586 bp Feature: domain Description: HEAT_2 Location: 6409-6586 bp Feature: domain Description: HEAT_2 Location: 7168-7378 bp Feature: domain Description: HEAT_2 Location: 7168-7378 bp Feature: domain Description: HEAT_2 Location: 7645-7777 bp Feature: domain Description: HEAT_2 Location: 7645-7777 bp Feature: domain Description: HEAT_2 Location: 7801-7960 bp Feature: domain Description: HEAT_2 Location: 7801-7960 bp Feature: domain Description: HEAT_2 Location: 7975-8098 bp Feature: domain Description: HEAT_2 Location: 7975-8098 bp Feature: domain Description: HEAT_2 Location: 8146-8353 bp Feature: domain Description: HEAT_2 Location: 8146-8353 bp Feature: domain Description: HEAT_2 Location: 9025-9184 bp Feature: domain Description: HEAT_2 Location: 902 5-9184 bp Feature: domain Description: HEAT_2 Location: 9475-9697 bp Feature: domain Description: HEAT_2 Location: 9475-9697 bp Feature: domain Description: HEAT_2 Location: 10126-10378 bp Feature: domain Description: HEAT_2 Location: 1012 6-10378 bp Feature: domain Description: HEAT_2 Location: 11278-11485 bp Feature: domain Description: HEAT_2 Location: 112 78-11485 bp Feature: domain Description: HEAT_2 Location: 11608-11794 bp Feature: domain Description: HEAT_2 Location: 11608-11794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646), RVT-Retrons, Nnr1 (COG0062)

Seq: ABGO01000117.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221704877, whole genome shotgun sequence (22420 bp)
Overview 1 RT 1: 8098-14234 bp Neighborhood of RT #1 [8098, 14371] HEAT_2 HEAT HEAT_2 Aldo_ket_red RVT-Retrons FGE-sulfatase PQQ_3 PQQ_2 PQQ_3 Feature: gene Location: 8098-8292 bp Feature: gene Location: 8356-10413 bp Feature: domain Description: HEAT_2 Location: 8515-8743 bp Feature: domain Description: HEAT_2 Location: 8515-8743 bp Feature: domain Description: HEAT Location: 8770-8830 bp Feature: domain Description: HEAT Location: 8770-883 0 bp Feature: domain Description: HEAT_2 Location: 8992-9190 bp Feature: domain Description: HEAT_2 Location: 8992-9190 bp Feature: domain Description: Aldo_ket_red Location: 9817-10348 bp Feature: domain Description: Aldo_ket_red Location: 9817-103 48 bp Feature: gene Location: 10485-12035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11112-11736 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11112-1173 6 bp Feature: gene Location: 12032-13012 bp Feature: domain Description: FGE-sulfatase Location: 12293-12974 bp Feature: domain Description: FGE-sulfatase Location: 12293 -12974 bp Feature: gene Location: 13043-14371 bp Feature: domain Description: PQQ_3 Location: 13214-13286 bp Feature: domain Description: PQQ_3 Location: 13 214-13 286 bp Feature: domain Description: PQQ_2 Location: 13388-14129 bp Feature: domain Description: PQQ_2 Location: 13 3 88-14129 bp Feature: domain Description: PQQ_3 Location: 14174-14234 bp Feature: domain Description: PQQ_3 Location: 14174-1423 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FGE-sulfatase (pfam03781), PQQ_3 (pfam13570), PQQ_2 (pfam13360), HEAT_2 (pfam13646), HEAT (sd00044), Aldo_ket_red (pfam00248)

Seq: ABGO01000087.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221709337, whole genome shotgun sequence (26583 bp)
Overview 1 RT 1: 1800-10249 bp Neighborhood of RT #1 [1800, 10254] N_methyl SBP_bac_10 SBP_bac_10 RpoE WD40 WD40 WD40 RVT-GII GIIM HEAT_2 murB Feature: gene Location: 1800-2765 bp Feature: domain Description: N_methyl Location: 1830-1893 bp Feature: domain Description: N_methyl Location: 1830-1893 bp Feature: domain Description: SBP_bac_10 Location: 1908-2109 bp Feature: domain Description: SBP_bac_10 Location: 1908-2109 bp Feature: domain Description: SBP_bac_10 Location: 2244-2700 bp Feature: domain Description: SBP_bac_10 Location: 224 4 -2700 bp Feature: gene Location: 2870-6250 bp Feature: domain Description: RpoE Location: 2975-3461 bp Feature: domain Description: RpoE Location: 2975-34 61 bp Feature: domain Description: WD40 Location: 3884-4571 bp Feature: domain Description: WD4 0 Location: 3884 -4 571 bp Feature: domain Description: WD40 Location: 4697-5042 bp Feature: domain Description: WD4 0 Location: 4 697-504 2 bp Feature: domain Description: WD40 Location: 5405-5717 bp Feature: domain Description: WD4 0 Location: 54 05-5717 bp Feature: gene Location: 6525-7688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6633-7248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6633-724 8 bp Feature: domain Description: GIIM Note: maturase Location: 7296-7500 bp Feature: domain Description: GIIM Note: maturase Location: 7296-7500 bp Feature: gene Location: 8458-9222 bp Feature: domain Description: HEAT_2 Location: 8797-9079 bp Feature: domain Description: HEAT_2 Location: 8797-9079 bp Feature: gene Location: 9376-10254 bp Feature: domain Description: murB Location: 9409-10249 bp Feature: domain Description: murB Location: 94 09-1024 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N_methyl (pfam07963), SBP_bac_10 (pfam07596), RpoE (COG3343), WD40 (smart00320), RVT-GII, GIIM (pfam08388), HEAT_2 (pfam13646), murB (TIGR00179)

Seq: ABGO01000046.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221710811, whole genome shotgun sequence (37234 bp)
Overview 1 RT 1: 17113-22657 bp Neighborhood of RT #1 [17113, 22659] SIRT5_Af1_CobB PGM_like4 RVT-Retrons WcaJ_sugtrans Feature: gene Location: 17113-17862 bp Feature: domain Description: SIRT5_Af1_CobB Location: 17179-17848 bp Feature: domain Description: SIRT5 _Af1_CobB Location: 17179-17848 bp Feature: gene Location: 17937-19286 bp Feature: domain Description: PGM_like4 Location: 17961-19263 bp Feature: domain Description: PGM_like4 Location: 17961-19263 bp Feature: gene Location: 19347-20705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19806-20436 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19806-20436 bp Feature: gene Location: 20933-21109 bp Feature: gene Location: 21259-22659 bp Feature: domain Description: WcaJ_sugtrans Location: 21304-22657 bp Feature: domain Description: WcaJ_sugtrans Location: 21304-2265 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIRT5_Af1_CobB (cd01412), PGM_like4 (cd05803), RVT-Retrons, WcaJ_sugtrans (TIGR03023)

Seq: ABGO01000042.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221717577, whole genome shotgun sequence (39317 bp)
Overview 1 RT 1: 73-4424 bp Neighborhood of RT #1 [73, 4498] RVT-Retrons PAS_like PQQ_2 Feature: gene Location: 73-1683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 841-1456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 841-1456 bp Feature: gene Location: 1831-3531 bp Feature: domain Description: PAS_like Location: 1891-3418 bp Feature: domain Description: PAS_like Location: 1891-3418 bp Feature: gene Location: 3599-4498 bp Feature: domain Description: PQQ_2 Location: 3653-4424 bp Feature: domain Description: PQQ_2 Location: 36 53-4424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_like (cd16025), PQQ_2 (pfam13360), RVT-Retrons

Seq: ABGO01000004.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221706117, whole genome shotgun sequence (81283 bp)
Overview 1 RT 1: 8624-14755 bp Neighborhood of RT #1 [8624, 14755] RVT-GII GIIM XerC Feature: gene Location: 8624-9643 bp Feature: gene Location: 10100-10522 bp Feature: gene Location: 10671-12089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11034-11649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11034-11649 bp Feature: domain Description: GIIM Note: maturase Location: 11697-11901 bp Feature: domain Description: GIIM Note: maturase Location: 11697 -11901 bp Feature: gene Location: 12800-13924 bp Feature: domain Description: XerC Location: 13031-13787 bp Feature: domain Description: XerC Location: 13031-137 87 bp Feature: gene Location: 14240-14755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), XerC (COG4973)

Seq: ABGO01000001.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221703457, whole genome shotgun sequence (196275 bp)
Overview 1 RT 1: 114365-116978 bp Neighborhood of RT #1 [114365, 116978] InsE InsE RVT-GII DUF2171 Feature: gene Location: 114365-114652 bp Feature: domain Description: InsE Location: 114377-114644 bp Feature: domain Description: InsE Location: 114377-114644 bp Feature: gene Location: 114713-114943 bp Feature: domain Description: InsE Location: 114725-114908 bp Feature: domain Description: InsE Location: 114725-114908 bp Feature: gene Location: 114975-115748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115338-115728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115338 -115728 bp Feature: gene Location: 116264-116647 bp Feature: domain Description: DUF2171 Location: 116423-116603 bp Feature: domain Description: DUF2171 Location: 116423-116603 bp Feature: gene Location: 116787-116978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, DUF2171 (pfam09939)