myRT

myRT report for GCA_000172075.1_ASM17207v1

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Seq: ABIC01000057.1 Shewanella benthica KT99 1099576005611, whole genome shotgun sequence (20463 bp)
Overview 1 RT 1: 18259-20463 bp Neighborhood of RT #1 [18259, 20463] antidote_HigA HigB-like_toxin RVT-GII Feature: gene Location: 18259-18555 bp Ori: EDP98996.1 Feature: domain Description: antidote_HigA Location: 18277-18508 bp Feature: domain Description: antidote_HigA Location: 1 8277-1 8508 bp Feature: gene Location: 18555-18833 bp Ori: EDP98997.1 Feature: domain Description: HigB-like_toxin Location: 18564-18831 bp Feature: domain Description: HigB-like_toxin Location: 1 8564-1 8831 bp Feature: gene Location: 19544-19852 bp Ori: EDP98998.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19766-19850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9766-1 9850 bp Feature: gene Location: 19950-20210 bp Feature: gene Location: 20285-20463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antidote_HigA (TIGR02607), HigB-like_toxin (pfam05015), RVT-GII

Seq: ABIC01000013.1 Shewanella benthica KT99 1099576005640, whole genome shotgun sequence (100196 bp)
Overview 1 RT 1: 20133-26466 bp Neighborhood of RT #1 [20133, 26466] PrtC DUF3656 PrtC RAYT RAYT RVT-GII GIIM Feature: gene Location: 20133-22424 bp Ori: EDQ01018.1 Feature: domain Description: PrtC Location: 20145-21060 bp Feature: domain Description: PrtC Location: 2 0145-2 1060 bp Feature: domain Description: DUF3656 Location: 21159-21510 bp Feature: domain Description: DUF3656 Location: 2 1159-2 1510 bp Feature: domain Description: PrtC Location: 21762-22248 bp Feature: domain Description: PrtC Location: 2 1762 -2 2 2 48 bp Feature: gene Location: 23327-24139 bp Ori: EDQ01019.1 Feature: domain Description: RAYT Location: 23342-23396 bp Feature: domain Description: RAYT Location: 2 3342 -2 3396 bp Feature: domain Description: RAYT Location: 23564-23762 bp Feature: domain Description: RAYT Location: 2 3564-2 3762 bp Feature: gene Location: 24352-25209 bp Ori: EDQ01020.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24373-24763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4373-2 4763 bp Feature: domain Description: GIIM Note: maturase Location: 24811-25015 bp Feature: domain Description: GIIM Note: maturase Location: 2 4811-2 5015 bp Feature: gene Location: 25296-25958 bp Feature: gene Location: 26263-26466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrtC (COG0826), DUF3656 (pfam12392), RAYT (COG1943), RVT-GII, GIIM (pfam08388)

Seq: ABIC01000002.1 Shewanella benthica KT99 1099576005664, whole genome shotgun sequence (174596 bp)
Overview 1 RT 1: 31529-36721 bp Neighborhood of RT #1 [31529, 36861] TIGR02646 COG3950 RVT-Retrons zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 31529-32167 bp Ori: EDQ02531.1 Feature: domain Description: TIGR02646 Location: 31628-31931 bp Feature: domain Description: TIGR02646 Location: 3 1628-3 193 1 bp Feature: gene Location: 32172-33776 bp Ori: EDQ02532.1 Feature: domain Description: COG3950 Location: 32358-33585 bp Feature: domain Description: COG3 950 Location: 3 23 58-3 3 585 bp Feature: gene Location: 33769-34719 bp Ori: EDQ02533.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33877-34474 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 3 877-3 4474 bp Feature: gene Location: 35426-35686 bp Feature: gene Location: 35722-36861 bp Ori: EDQ02535.1 Feature: domain Description: zf-IS66 Location: 35734-35866 bp Feature: domain Description: zf-IS66 Location: 3 573 4-3 5866 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35911-36721 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 5911-3 6721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: ABIC01000004.1 Shewanella benthica KT99 1099576005650, whole genome shotgun sequence (158715 bp)
Overview 1 RT 1: 63358-72007 bp Neighborhood of RT #1 [63358, 72007] HsdM HsdS RMtype1_S_EcoJA65PI-TRD1-CR1_like RMtype1_S_EcoJA65PI-TRD1-CR1_like RVT-UG1 DDE_Tnp_IS66 Feature: gene Location: 63358-64845 bp Ori: EDQ02235.1 Feature: domain Description: HsdM Location: 63364-64831 bp Feature: domain Description: HsdM Location: 63364 -64 831 bp Feature: gene Location: 64848-66653 bp Ori: EDQ02236.1 Feature: domain Description: HsdS Location: 64944-65208 bp Feature: domain Description: HsdS Location: 64 94 4 -65208 bp Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 65223-65748 bp Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 65223-6574 8 bp Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 66084-66621 bp Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 66084 -66621 bp Feature: gene Location: 66706-70383 bp Ori: EDQ02237.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 67330-67825 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 67330-67825 bp Feature: gene Location: 70572-71561 bp Ori: EDQ02238.1 Feature: domain Description: DDE_Tnp_IS66 Location: 70611-71421 bp Feature: domain Description: DDE_Tnp_IS66 Location: 70611-714 21 bp Feature: gene Location: 71747-72007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), HsdS (COG0732), RMtype1_S_EcoJA65PI-TRD1-CR1_like (cd17256), RVT-UG1, DDE_Tnp_IS66 (pfam03050)

Seq: ABIC01000011.1 Shewanella benthica KT99 1099576005661, whole genome shotgun sequence (112570 bp)
Overview 1 RT 1: 95583-99564 bp Neighborhood of RT #1 [95583, 99650] PilZ RVT_N RVT-GII Tra5 HTH_Tnp_1 Feature: gene Location: 95583-95951 bp Ori: EDQ01290.1 Feature: domain Description: PilZ Location: 95592-95880 bp Feature: domain Description: PilZ Location: 95 5 92-95 880 bp Feature: gene Location: 96047-96403 bp Feature: gene Location: 97472-98140 bp Ori: EDQ01292.1 Feature: domain Description: RVT_N Location: 97604-97847 bp Feature: domain Description: RVT_N Location: 97604-97847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97892-98120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97892-98120 bp Feature: gene Location: 98158-99240 bp Ori: EDQ01293.1 Feature: domain Description: Tra5 Location: 98485-99076 bp Feature: domain Description: Tra5 Location: 98485 -99076 bp Feature: gene Location: 99453-99650 bp Ori: EDQ01294.1 Feature: domain Description: HTH_Tnp_1 Location: 99459-99564 bp Feature: domain Description: HTH_Tnp_1 Location: 9945 9-995 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilZ (pfam07238), RVT_N (pfam13655), RVT-GII, Tra5 (COG2801), HTH_Tnp_1 (pfam01527)

Seq: ABIC01000029.1 Shewanella benthica KT99 1099576005629, whole genome shotgun sequence (55787 bp)
Overview 1 RT 1: 159-3794 bp Neighborhood of RT #1 [159, 3796] DDE_Tnp_IS66 RVT-GII GIIM integrase_gron Feature: gene Location: 159-959 bp Ori: EDP99885.1 Feature: domain Description: DDE_Tnp_IS66 Location: 165-819 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 16 5-819 bp Feature: gene Location: 974-1975 bp Ori: EDP99886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1529 bp Feature: domain Description: GIIM Note: maturase Location: 1577-1781 bp Feature: domain Description: GIIM Note: maturase Location: 1577-1781 bp Feature: gene Location: 2069-2527 bp Feature: gene Location: 2858-3796 bp Ori: EDP99888.1 Feature: domain Description: integrase_gron Location: 2861-3794 bp Feature: domain Description: integrase_gron Location: 286 1-3794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), integrase_gron (TIGR02249)