myRT

myRT report for GCA_000172155.1_ASM17215v1

Download annotations/find similar RTs

Seq: ABIZ01000001.1 Verrucomicrobium spinosum DSM 4136 chromosome, whole genome shotgun sequence (8220857 bp)
Overview 1 RT 1: 1038371-1042220 bp 2 RT 2: 1513534-1518738 bp 3 RT 3: 4655596-4660965 bp 4 RT 4: 6551838-6555763 bp 5 RT 5: 7462491-7466793 bp Neighborhood of RT #1 [1038371, 1042220] DDE_Tnp_IS66_C RVT-GII GIIM Y1_Tnp Neighborhood of RT #2 [1513534, 1518738] TIGR03943 TIGR03943 TlyC RVT-GII group_II_RT_mat Neighborhood of RT #3 [4655596, 4660994] SRAP RVT-UG2 XerC SGSH Neighborhood of RT #4 [6551838, 6555831] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Neighborhood of RT #5 [7462491, 7467035] TnpB_IS66 LZ_Tnp_IS66 DDE_Tnp_IS66 RVT-GII GIIM Y1_Tnp Feature: gene Location: 1038371-1038733 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1038467-1038575 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 038467-1 038575 bp Feature: gene Location: 1038842-1039207 bp Feature: gene Location: 1039448-1040797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039568-1040234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 039568-1 040234 bp Feature: domain Description: GIIM Note: maturase Location: 1040303-1040510 bp Feature: domain Description: GIIM Note: maturase Location: 1 040303-1 04051 0 bp Feature: gene Location: 1040661-1041785 bp Feature: domain Description: Y1_Tnp Location: 1040709-1040877 bp Feature: domain Description: Y1 _Tnp Location: 1 040709-1 040877 bp Feature: gene Location: 1042077-1042220 bp Feature: gene Location: 1513534-1514928 bp Feature: domain Description: TIGR03943 Location: 1513618-1513804 bp Feature: domain Description: TIGR03943 Location: 1 51 361 8-1 51 3804 bp Feature: domain Description: TIGR03943 Location: 1514140-1514914 bp Feature: domain Description: TIGR03943 Location: 1 51 41 40-1 51 491 4 bp Feature: gene Location: 1515115-1516431 bp Feature: domain Description: TlyC Location: 1515127-1516411 bp Feature: domain Description: TlyC Location: 1 51 51 27-1 51 641 1 bp Feature: gene Location: 1517099-1518028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517468-1518014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 7468-1 51 801 4 bp Feature: gene Location: 1518060-1518485 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1518078-1518348 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 51 8078-1 51 8348 bp Feature: gene Location: 1518595-1518738 bp Feature: gene Location: 4655596-4655796 bp Feature: gene Location: 4655842-4656549 bp Feature: domain Description: SRAP Location: 4655845-4656538 bp Feature: domain Description: SRAP Location: 4655845-4656538 bp Feature: gene Location: 4656607-4657944 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4656796-4657615 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4656796-465761 5 bp Feature: gene Location: 4658335-4659591 bp Feature: domain Description: XerC Location: 4658635-4659568 bp Feature: domain Description: XerC Location: 4658635-4659568 bp Feature: gene Location: 4660086-4660994 bp Feature: domain Description: SGSH Location: 4660242-4660965 bp Feature: domain Description: SGSH Location: 4660242-4660965 bp Feature: gene Location: 6551838-6552197 bp Feature: domain Description: TnpB_IS66 Location: 6551865-6552162 bp Feature: domain Description: TnpB_IS66 Location: 6551 865-65521 62 bp Feature: gene Location: 6552260-6553600 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6552353-6552569 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6552353-6552569 bp Feature: domain Description: zf-IS66 Location: 6552614-6552698 bp Feature: domain Description: zf-IS66 Location: 655261 4-6552698 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6552764-6553532 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6552764-6553532 bp Feature: gene Location: 6553647-6555053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6553962-6554628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6553962-6554628 bp Feature: domain Description: GIIM Note: maturase Location: 6554697-6554904 bp Feature: domain Description: GIIM Note: maturase Location: 6554697-6554904 bp Feature: gene Location: 6555251-6555412 bp Feature: gene Location: 6555610-6555831 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6555655-6555763 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6555655-6555763 bp Feature: gene Location: 7462491-7462847 bp Feature: domain Description: TnpB_IS66 Location: 7462518-7462818 bp Feature: domain Description: TnpB_IS66 Location: 746251 8-746281 8 bp Feature: gene Location: 7462918-7464381 bp Feature: domain Description: LZ_Tnp_IS66 Location: 7463080-7463359 bp Feature: domain Description: LZ_Tnp_IS66 Location: 7463080-7463359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7463545-7464313 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7463545-746431 3 bp Feature: gene Location: 7464428-7465834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7464743-7465409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7464743-7465409 bp Feature: domain Description: GIIM Note: maturase Location: 7465478-7465685 bp Feature: domain Description: GIIM Note: maturase Location: 7465478-7465685 bp Feature: gene Location: 7466032-7466193 bp Feature: gene Location: 7466577-7467035 bp Feature: domain Description: Y1_Tnp Location: 7466622-7466793 bp Feature: domain Description: Y1 _Tnp Location: 7466622-7466793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), Y1_Tnp (pfam01797), TIGR03943 (TIGR03943 family protein), TlyC (COG1253), group_II_RT_mat (TIGR04416), SRAP (pfam02586), RVT-UG2, XerC (COG4973)
SGSH (cd16027), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)