myRT

myRT report for GCA_000172455.1_ASM17245v1

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Seq: ABOO01000058.1 Clostridium perfringens D str. JGS1721 gcontig_1108490430921, whole genome shotgun sequence (18843 bp)
Overview 1 RT 1: 5490-11501 bp Neighborhood of RT #1 [5490, 11501] RHH_1 RHH_1 SH3_and_anchor Smc RVT-GII Intron_maturas2 HNHc Slt70_like Spr Feature: gene Location: 5490-6104 bp Feature: domain Description: RHH_1 Location: 5523-5610 bp Feature: domain Description: RHH_1 Location: 5523-561 0 bp Feature: domain Description: RHH_1 Location: 5859-5946 bp Feature: domain Description: RHH_1 Location: 5859-5946 bp Feature: gene Location: 6582-7487 bp Feature: domain Description: SH3_and_anchor Location: 6612-6714 bp Feature: domain Description: SH3_and_anchor Location: 661 2-671 4 bp Feature: domain Description: Smc Location: 7086-7473 bp Feature: domain Description: Smc Location: 7086-7473 bp Feature: gene Location: 7685-9487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7949-8768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7949-8768 bp Feature: domain Description: Intron_maturas2 Location: 8849-9191 bp Feature: domain Description: Intron_maturas2 Location: 8849-91 91 bp Feature: domain Description: HNHc Note: nucleases Location: 9311-9458 bp Feature: domain Description: HNHc Note: nucleases Location: 931 1 -9458 bp Feature: gene Location: 10042-11121 bp Feature: domain Description: Slt70_like Location: 10237-10372 bp Feature: domain Description: Slt70_like Location: 1 0237-1 0372 bp Feature: domain Description: Spr Location: 10804-11110 bp Feature: domain Description: Spr Location: 1 0804-1 1 1 1 0 bp Feature: gene Location: 11142-11501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Slt70_like, Spr (COG0791), RHH_1 (pfam01402), SH3_and_anchor (TIGR04211), Smc (COG1196), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: ABOO01000017.1 Clostridium perfringens D str. JGS1721 gcontig_1108490430283, whole genome shotgun sequence (82150 bp)
Overview 1 RT 1: 17750-29949 bp 2 RT 2: 38661-45515 bp Neighborhood of RT #1 [17750, 30014] YdjM RVT-GII Intron_maturas2 HNHc FlgJ Spr AAA_10 RVT-GII HNHc AAA_10 TcpE Neighborhood of RT #2 [38661, 45529] RVT-GII HNHc TED COG4932 SpaA COG4932 PemK_toxin Feature: gene Location: 17750-18244 bp Feature: domain Description: YdjM Location: 17753-18203 bp Feature: domain Description: YdjM Location: 17753-182 03 bp Feature: gene Location: 18247-20730 bp Feature: gene Location: 21059-22861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21323-22142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 132 3-2 2 142 bp Feature: domain Description: Intron_maturas2 Location: 22223-22556 bp Feature: domain Description: Intron_maturas2 Location: 2 2 2 2 3-2 2 556 bp Feature: domain Description: HNHc Note: nucleases Location: 22685-22832 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 685-2 2 832 bp Feature: gene Location: 23416-24312 bp Feature: domain Description: FlgJ Location: 23527-24004 bp Feature: domain Description: FlgJ Location: 2 352 7-2 4004 bp Feature: domain Description: Spr Location: 24019-24304 bp Feature: domain Description: Spr Location: 2 4019-2 4304 bp Feature: gene Location: 24312-24686 bp Feature: domain Description: AAA_10 Location: 24315-24642 bp Feature: domain Description: AAA_10 Location: 2 4315-2 4642 bp Feature: gene Location: 24814-26745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25141-25879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5141-2 5879 bp Feature: domain Description: HNHc Note: nucleases Location: 26428-26593 bp Feature: domain Description: HNHc Note: nucleases Location: 2 642 8-2 6593 bp Feature: gene Location: 27420-29588 bp Feature: domain Description: AAA_10 Location: 28869-29571 bp Feature: domain Description: AAA_10 Location: 2 8869-2 9571 bp Feature: gene Location: 29646-30014 bp Feature: domain Description: TcpE Location: 29676-29949 bp Feature: domain Description: TcpE Location: 2 9676-2 9949 bp Feature: gene Location: 38661-38789 bp Feature: gene Location: 38861-39010 bp Feature: gene Location: 39451-41274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39769-40465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39769-40465 bp Feature: domain Description: HNHc Note: nucleases Location: 40999-41158 bp Feature: domain Description: HNHc Note: nucleases Location: 40999-41158 bp Feature: gene Location: 41914-44955 bp Feature: domain Description: TED Location: 42052-42328 bp Feature: domain Description: TED Location: 42 052 -42 32 8 bp Feature: domain Description: COG4932 Location: 42442-43414 bp Feature: domain Description: COG4932 Location: 42 442 -43414 bp Feature: domain Description: SpaA Location: 43603-43819 bp Feature: domain Description: SpaA Location: 43603-43819 bp Feature: domain Description: COG4932 Location: 44002-44872 bp Feature: domain Description: COG4932 Location: 44002 -44872 bp Feature: gene Location: 45155-45529 bp Feature: domain Description: PemK_toxin Location: 45200-45515 bp Feature: domain Description: PemK_toxin Location: 452 00-45515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdjM (pfam04307), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), FlgJ (COG1705), Spr (COG0791), AAA_10 (pfam12846), TcpE (pfam12648), TED (pfam08341), COG4932 (Uncharacterized surface anchored protein )
SpaA (pfam17802), PemK_toxin (pfam02452)