myRT

myRT report for GCA_000173075.1_ASM17307v1

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Seq: ABVL01000009.1 Chthoniobacter flavus Ellin428 ctg71, whole genome shotgun sequence (268902 bp)
Overview 1 RT 1: 90988-96961 bp 2 RT 2: 194511-198525 bp Neighborhood of RT #1 [90988, 97020] AtoC Y1_Tnp RVT-GII GIIM RluA RAYT Neighborhood of RT #2 [194511, 198563] PRK02126 RVT-GII GIIM SUKH_6 PRK02126 Feature: gene Location: 90988-92373 bp Ori: EDY19110.1 Feature: domain Description: AtoC Location: 91000-92359 bp Feature: domain Description: AtoC Location: 91 000-92359 bp Feature: gene Location: 92746-93396 bp Ori: EDY19111.1 Feature: domain Description: Y1_Tnp Location: 93097-93313 bp Feature: domain Description: Y1 _Tnp Location: 93097-9331 3 bp Feature: gene Location: 93499-94746 bp Ori: EDY19112.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93706-94321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93706-94321 bp Feature: domain Description: GIIM Note: maturase Location: 94372-94573 bp Feature: domain Description: GIIM Note: maturase Location: 94372-94573 bp Feature: gene Location: 95430-96299 bp Ori: EDY19113.1 Feature: domain Description: RluA Location: 95484-96276 bp Feature: domain Description: RluA Location: 95484-96276 bp Feature: gene Location: 96487-97020 bp Ori: EDY19114.1 Feature: domain Description: RAYT Location: 96607-96961 bp Feature: domain Description: RAYT Location: 96607-96961 bp Feature: gene Location: 194511-194624 bp Feature: gene Location: 194581-194856 bp Ori: EDY19189.1 Feature: domain Description: PRK02126 Location: 194593-194743 bp Feature: domain Description: PRK021 26 Location: 1 94593-1 94743 bp Feature: gene Location: 194844-196169 bp Ori: EDY19190.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195123-195816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 951 23-1 9581 6 bp Feature: domain Description: GIIM Note: maturase Location: 195885-196095 bp Feature: domain Description: GIIM Note: maturase Location: 1 95885-1 96095 bp Feature: gene Location: 196863-197399 bp Ori: EDY19191.1 Feature: domain Description: SUKH_6 Location: 196956-197358 bp Feature: domain Description: SUKH_6 Location: 1 96956-1 97358 bp Feature: gene Location: 197556-198563 bp Ori: EDY19192.1 Feature: domain Description: PRK02126 Location: 197568-198525 bp Feature: domain Description: PRK021 26 Location: 1 97568-1 98525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), Y1_Tnp (pfam01797), RVT-GII, GIIM (pfam08388), RluA (COG0564), RAYT (COG1943), PRK02126 (ribonuclease Z; Provisional), SUKH_6 (pfam14568)

Seq: ABVL01000011.1 Chthoniobacter flavus Ellin428 ctg69, whole genome shotgun sequence (215888 bp)
Overview 1 RT 1: 56330-63154 bp Neighborhood of RT #1 [56330, 63154] RVT-Retrons Feature: gene Location: 56330-58108 bp Feature: gene Location: 58105-59805 bp Feature: gene Location: 60070-61725 bp Ori: EDY18696.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60880-61498 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60880-61498 bp Feature: gene Location: 61981-62319 bp Feature: gene Location: 62402-63154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: ABVL01000060.1 Chthoniobacter flavus Ellin428 ctg24, whole genome shotgun sequence (4836 bp)
Overview 1 RT 1: 401-3975 bp Neighborhood of RT #1 [401, 4010] RVT-GII GIIM PRK11360 Feature: gene Location: 401-1648 bp Ori: EDY15763.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-1223 bp Feature: domain Description: GIIM Note: maturase Location: 1268-1475 bp Feature: domain Description: GIIM Note: maturase Location: 1268-1475 bp Feature: gene Location: 1861-2328 bp Feature: gene Location: 2763-4010 bp Ori: EDY15765.1 Feature: domain Description: PRK11360 Location: 2904-3975 bp Feature: domain Description: PRK113 60 Location: 2904-3 975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK11360 (two-component system sensor histidine kinase AtoS)

Seq: ABVL01000028.1 Chthoniobacter flavus Ellin428 ctg53, whole genome shotgun sequence (84123 bp)
Overview 1 RT 1: 10988-18097 bp Neighborhood of RT #1 [10988, 18097] RVT-GII GIIM Feature: gene Location: 10988-11359 bp Feature: gene Location: 11356-14736 bp Feature: gene Location: 15285-16772 bp Ori: EDY16743.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15774-16416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15774 -164 16 bp Feature: domain Description: GIIM Note: maturase Location: 16485-16719 bp Feature: domain Description: GIIM Note: maturase Location: 164 85-16719 bp Feature: gene Location: 17206-17637 bp Feature: gene Location: 17831-18097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ABVL01000022.1 Chthoniobacter flavus Ellin428 ctg58, whole genome shotgun sequence (99458 bp)
Overview 1 RT 1: 40-2972 bp Neighborhood of RT #1 [40, 4165] RVT-GII GIIM PRK03612 NAD_binding_8 Feature: gene Location: 40-870 bp Ori: EDY17185.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 2-5 23 bp Feature: domain Description: GIIM Note: maturase Location: 604-802 bp Feature: domain Description: GIIM Note: maturase Location: 604-802 bp Feature: gene Location: 1068-2582 bp Ori: EDY17186.1 Feature: domain Description: PRK03612 Location: 1089-2571 bp Feature: domain Description: PRK03612 Location: 1089-25 71 bp Feature: gene Location: 2579-4165 bp Ori: EDY17187.1 Feature: domain Description: NAD_binding_8 Location: 2765-2972 bp Feature: domain Description: NAD_binding_8 Location: 2765 -2972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK03612 (polyamine aminopropyltransferase), NAD_binding_8 (pfam13450)

Seq: ABVL01000004.1 Chthoniobacter flavus Ellin428 ctg76, whole genome shotgun sequence (523621 bp)
Overview 1 RT 1: 190-5603 bp Neighborhood of RT #1 [190, 5728] RVT-GII GIIM DAP2 ARS_like Feature: gene Location: 190-372 bp Feature: gene Location: 366-1814 bp Ori: EDY20448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669-1335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 9-1335 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1620 bp Feature: domain Description: GIIM Note: maturase Location: 1410-16 20 bp Feature: gene Location: 2864-4057 bp Ori: EDY20449.1 Feature: domain Description: DAP2 Location: 3488-3620 bp Feature: domain Description: DAP2 Location: 3488-36 20 bp Feature: gene Location: 4256-5728 bp Ori: EDY20450.1 Feature: domain Description: ARS_like Location: 4373-5603 bp Feature: domain Description: ARS_like Location: 4373-56 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DAP2 (COG1506), ARS_like (cd16146)

Seq: ABVL01000017.1 Chthoniobacter flavus Ellin428 ctg63, whole genome shotgun sequence (153730 bp)
Overview 1 RT 1: 149351-153565 bp Neighborhood of RT #1 [149351, 153565] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 149351-149704 bp Ori: EDY17779.1 Feature: domain Description: TnpB_IS66 Location: 149378-149672 bp Feature: domain Description: TnpB_IS66 Location: 14937 8-14967 2 bp Feature: gene Location: 149723-151306 bp Ori: EDY17780.1 Feature: domain Description: LZ_Tnp_IS66 Location: 149867-150077 bp Feature: domain Description: LZ_Tnp_IS66 Location: 149867 -15007 7 bp Feature: domain Description: zf-IS66 Location: 150125-150209 bp Feature: domain Description: zf-IS66 Location: 150125-150209 bp Feature: domain Description: DDE_Tnp_IS66 Location: 150275-151127 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15027 5-151127 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 151148-151256 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 151148-151256 bp Feature: gene Location: 151390-152847 bp Ori: EDY17781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151879-152530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15187 9-152530 bp Feature: domain Description: GIIM Note: maturase Location: 152602-152836 bp Feature: domain Description: GIIM Note: maturase Location: 152602-152836 bp Feature: gene Location: 152837-152968 bp Feature: gene Location: 153158-153565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: ABVL01000008.1 Chthoniobacter flavus Ellin428 ctg72, whole genome shotgun sequence (289882 bp)
Overview 1 RT 1: 259550-264488 bp Neighborhood of RT #1 [259550, 264505] PRK12519 RVT-GII GIIM MlaE MlaF Feature: gene Location: 259550-259684 bp Feature: gene Location: 259807-260457 bp Ori: EDY19496.1 Feature: domain Description: PRK12519 Location: 259867-260413 bp Feature: domain Description: PRK12519 Location: 2598 67-260413 bp Feature: gene Location: 260845-262092 bp Ori: EDY19497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261052-261667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261052-261667 bp Feature: domain Description: GIIM Note: maturase Location: 261718-261928 bp Feature: domain Description: GIIM Note: maturase Location: 261718 -261928 bp Feature: gene Location: 262925-263719 bp Ori: EDY19498.1 Feature: domain Description: MlaE Location: 262976-263705 bp Feature: domain Description: MlaE Location: 262976-263705 bp Feature: gene Location: 263720-264505 bp Ori: EDY19499.1 Feature: domain Description: MlaF Location: 263729-264488 bp Feature: domain Description: MlaF Location: 263729-26448 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12519 (RNA polymerase sigma factor; Provisional), RVT-GII, GIIM (pfam08388), MlaE (pfam02405), MlaF (COG1127)

Seq: ABVL01000003.1 Chthoniobacter flavus Ellin428 ctg77, whole genome shotgun sequence (557994 bp)
Overview 1 RT 1: 280653-287136 bp Neighborhood of RT #1 [280653, 287318] DUF350 RVT-GII GIIM valS AmiC Feature: gene Location: 280653-280820 bp Feature: gene Location: 280829-281032 bp Ori: EDY21091.1 Feature: domain Description: DUF350 Location: 280865-281027 bp Feature: domain Description: DUF350 Location: 280865-281027 bp Feature: gene Location: 281768-283096 bp Ori: EDY21092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282089-282749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282089 -282749 bp Feature: domain Description: GIIM Note: maturase Location: 282830-283028 bp Feature: domain Description: GIIM Note: maturase Location: 282830-283028 bp Feature: gene Location: 283298-285979 bp Ori: EDY21093.1 Feature: domain Description: valS Location: 283304-285968 bp Feature: domain Description: valS Location: 283304-2859 68 bp Feature: gene Location: 286188-287318 bp Ori: EDY21094.1 Feature: domain Description: AmiC Location: 286539-287136 bp Feature: domain Description: AmiC Location: 286539 -287136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF350 (pfam03994), RVT-GII, GIIM (pfam08388), valS (TIGR00422), AmiC (COG0860)

Seq: ABVL01000001.1 Chthoniobacter flavus Ellin428 ctg79, whole genome shotgun sequence (675211 bp)
Overview 1 RT 1: 617160-623613 bp Neighborhood of RT #1 [617160, 623624] MviM RVT-UNC CHASE3 PAS_4 COG4251 Feature: gene Location: 617160-617393 bp Feature: gene Location: 617339-618394 bp Ori: EDY22424.1 Feature: domain Description: MviM Location: 617384-618341 bp Feature: domain Description: MviM Location: 617384-618341 bp Feature: gene Location: 618746-620467 bp Ori: EDY22425.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 619052-619565 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 619052-619565 bp Feature: gene Location: 620464-621414 bp Feature: gene Location: 621795-623624 bp Ori: EDY22427.1 Feature: domain Description: CHASE3 Location: 621825-622419 bp Feature: domain Description: CHASE3 Location: 621825-622419 bp Feature: domain Description: PAS_4 Location: 622509-622839 bp Feature: domain Description: PAS_4 Location: 622509-622839 bp Feature: domain Description: COG4251 Location: 622842-623613 bp Feature: domain Description: COG4251 Location: 622842-623613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), RVT-UG10/RVT-UG17/RVT-DGRs/RVT-UG25(RVT-UNC), CHASE3 (pfam05227), PAS_4 (pfam08448), COG4251 (Bacteriophytochrome (light-regulated signal transduction histidine kinase) )

Seq: ABVL01000047.1 Chthoniobacter flavus Ellin428 ctg33, whole genome shotgun sequence (24675 bp)
Overview 1 RT 1: 742-4851 bp Neighborhood of RT #1 [742, 4851] Aes RVT-GII GIIM Csn1 DUF1080 Feature: gene Location: 742-1653 bp Ori: EDY15904.1 Feature: domain Description: Aes Location: 1009-1609 bp Feature: domain Description: Aes Location: 1009-1609 bp Feature: gene Location: 1921-3168 bp Ori: EDY15905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2128-2743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2128-2743 bp Feature: domain Description: GIIM Note: maturase Location: 2794-3004 bp Feature: domain Description: GIIM Note: maturase Location: 2794-3004 bp Feature: gene Location: 3670-4662 bp Ori: EDY15906.1 Feature: domain Description: Csn1 Location: 3694-3940 bp Feature: domain Description: Csn1 Location: 3694-3940 bp Feature: domain Description: DUF1080 Location: 4018-4546 bp Feature: domain Description: DUF1080 Location: 4018-4546 bp Feature: gene Location: 4714-4851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), RVT-GII, GIIM (pfam08388), Csn1 (cd09643), DUF1080 (pfam06439)

Seq: ABVL01000056.1 Chthoniobacter flavus Ellin428 ctg23, whole genome shotgun sequence (6159 bp)
Overview 1 RT 1: 4110-6058 bp Neighborhood of RT #1 [4110, 6111] RVT-GII GIIM Feature: gene Location: 4110-4535 bp Feature: gene Location: 5356-5562 bp Feature: gene Location: 5644-6111 bp Ori: EDY15794.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5650-5755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5650-5755 bp Feature: domain Description: GIIM Note: maturase Location: 5824-6058 bp Feature: domain Description: GIIM Note: maturase Location: 5824-6058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ABVL01000040.1 Chthoniobacter flavus Ellin428 ctg38, whole genome shotgun sequence (37629 bp)
Overview 1 RT 1: 34018-36569 bp Neighborhood of RT #1 [34018, 36613] RVT-GII GIIM HEPN_RiboL-PSP Feature: gene Location: 34018-34290 bp Feature: gene Location: 34256-34405 bp Feature: gene Location: 34578-35366 bp Ori: EDY16123.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34581-35013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34581-35013 bp Feature: domain Description: GIIM Note: maturase Location: 35082-35292 bp Feature: domain Description: GIIM Note: maturase Location: 35082-35292 bp Feature: gene Location: 35366-35878 bp Feature: gene Location: 35915-36613 bp Ori: EDY16125.1 Feature: domain Description: HEPN_RiboL-PSP Location: 35951-36569 bp Feature: domain Description: HEPN_RiboL-PSP Location: 35951-36569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HEPN_RiboL-PSP (pfam18735)

Seq: ABVL01000037.1 Chthoniobacter flavus Ellin428 ctg43, whole genome shotgun sequence (49574 bp)
Overview 1 RT 1: 5-1591 bp Neighborhood of RT #1 [5, 2016] RVT-GII GIIM SASA Feature: gene Location: 5-508 bp Ori: EDY16211.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-161 bp Feature: domain Description: GIIM Note: maturase Location: 242-440 bp Feature: domain Description: GIIM Note: maturase Location: 242-440 bp Feature: gene Location: 790-1155 bp Feature: gene Location: 1258-2016 bp Ori: EDY16213.1 Feature: domain Description: SASA Location: 1318-1591 bp Feature: domain Description: SASA Location: 1318-1591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SASA (pfam03629)