myRT

myRT report for GCA_000173735.1_ASM17373v1

Download annotations/find similar RTs

Seq: ACCB01000071.1 Yersinia aldovae ATCC 35236 contig00246, whole genome shotgun sequence (6466 bp)
Overview 1 RT 1: 2358-5457 bp Neighborhood of RT #1 [2358, 5468] W phage_P2_V RVT-Retrons HTH_XRE tail_comp_S Feature: gene Location: 2358-2666 bp Ori: EEP93651.1 Feature: domain Description: W Location: 2361-2655 bp Feature: domain Description: W Location: 2361 -2655 bp Feature: gene Location: 2687-3328 bp Ori: EEP93652.1 Feature: domain Description: phage_P2_V Location: 2723-3317 bp Feature: domain Description: phage_P2_V Location: 2723-331 7 bp Feature: gene Location: 3429-4136 bp Ori: EEP93653.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3435-3921 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3435-3921 bp Feature: gene Location: 4336-4653 bp Ori: EEP93654.1 Feature: domain Description: HTH_XRE Location: 4351-4513 bp Feature: domain Description: HTH_XRE Location: 4351 -451 3 bp Feature: gene Location: 5199-5468 bp Ori: EEP93655.1 Feature: domain Description: tail_comp_S Location: 5205-5457 bp Feature: domain Description: tail_comp_S Location: 5205-5457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT W (PHA02516), phage_P2_V (TIGR01644), RVT-Retrons, HTH_XRE (smart00530), tail_comp_S (TIGR01635)

Seq: ACCB01000073.1 Yersinia aldovae ATCC 35236 contig00027, whole genome shotgun sequence (5541 bp)
Overview 1 RT 1: 3433-5542 bp Neighborhood of RT #1 [3433, 5541] Doc Gp138_N RVT-GII GIIM PHA02517 Feature: gene Location: 3433-3702 bp Ori: EEP93638.1 Feature: domain Description: Doc Location: 3442-3694 bp Feature: domain Description: Doc Location: 3442 -3694 bp Feature: gene Location: 3765-4439 bp Ori: EEP93639.1 Feature: domain Description: Gp138_N Location: 3858-4161 bp Feature: domain Description: Gp138_N Location: 3858-4161 bp Feature: gene Location: 4463-5296 bp Ori: EEP93640.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4469-4778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4469-4778 bp Feature: domain Description: GIIM Note: maturase Location: 4853-5075 bp Feature: domain Description: GIIM Note: maturase Location: 4853-5075 bp Feature: gene Location: 5422-5541 bp Ori: EEP93641.1 Feature: domain Description: PHA02517 Location: 5425-5542 bp Feature: domain Description: PHA02 517 Location: 542 5-5542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Doc (COG3654), Gp138_N (pfam18352), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)