myRT

myRT report for GCA_000174195.1_ASM17419v1

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Seq: ACFY01000152.1 Roseburia inulinivorans DSM 16841 R_inulinivorans-1.0.1_Cont557.1, whole genome shotgun sequence (56212 bp)
Overview 1 RT 1: 38418-43889 bp Neighborhood of RT #1 [38418, 43900] PRK10572 RVT-GII GIIM Integrase_DNA Phage_int_SAM_3 INT_ICEBs1_C_like HTH_17 Feature: gene Location: 38418-39272 bp Ori: EEG92567.1 Feature: domain Description: PRK10572 Location: 38616-39267 bp Feature: domain Description: PRK1 0572 Location: 3861 6-39267 bp Feature: gene Location: 39426-39710 bp Feature: gene Location: 40397-41791 bp Ori: EEG92569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40715-41339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4071 5-41 339 bp Feature: domain Description: GIIM Note: maturase Location: 41396-41606 bp Feature: domain Description: GIIM Note: maturase Location: 41 396-41 606 bp Feature: gene Location: 42501-43643 bp Ori: EEG92570.1 Feature: domain Description: Integrase_DNA Location: 42516-42654 bp Feature: domain Description: Integrase_DNA Location: 4251 6-42654 bp Feature: domain Description: Phage_int_SAM_3 Location: 42702-42867 bp Feature: domain Description: Phage_int_SAM_3 Location: 42702-42867 bp Feature: domain Description: INT_ICEBs1_C_like Location: 43023-43590 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 43023-43590 bp Feature: gene Location: 43730-43900 bp Ori: EEG92571.1 Feature: domain Description: HTH_17 Location: 43745-43889 bp Feature: domain Description: HTH_1 7 Location: 43745-43889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10572 (arabinose operon transcriptional regulator AraC), RVT-GII, GIIM (pfam08388), Integrase_DNA (pfam02920), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), HTH_17 (pfam12728)

Seq: ACFY01000166.1 Roseburia inulinivorans DSM 16841 R_inulinivorans-1.0.1_Cont581.1, whole genome shotgun sequence (1868 bp)
Overview 1 RT 1: 462-1602 bp Neighborhood of RT #1 [462, 1781] RVT-GII GIIM Feature: gene Location: 462-1781 bp Ori: EEG91999.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-132 3 bp Feature: domain Description: GIIM Note: maturase Location: 1383-1602 bp Feature: domain Description: GIIM Note: maturase Location: 1383-1602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ACFY01000105.1 Roseburia inulinivorans DSM 16841 R_inulinivorans-1.0.1_Cont458.1, whole genome shotgun sequence (976 bp)
Overview 1 RT 1: 1-817 bp Neighborhood of RT #1 [1, 876] RVT-GII GIIM Feature: gene Location: 1-876 bp Ori: EEG93331.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-511 bp Feature: domain Description: GIIM Note: maturase Location: 592-817 bp Feature: domain Description: GIIM Note: maturase Location: 592-817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ACFY01000094.1 Roseburia inulinivorans DSM 16841 R_inulinivorans-1.0.1_Cont434.1, whole genome shotgun sequence (64111 bp)
Overview 1 RT 1: 3280-5821 bp Neighborhood of RT #1 [3280, 5821] RVT-GII group_II_RT_mat Feature: gene Location: 3280-3729 bp Feature: gene Location: 3976-4134 bp Feature: gene Location: 4224-5039 bp Ori: EEG93712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4479-5034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 79-5034 bp Feature: gene Location: 5040-5519 bp Ori: EEG93713.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 5043-5427 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 504 3-54 27 bp Feature: gene Location: 5633-5821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: ACFY01000096.1 Roseburia inulinivorans DSM 16841 R_inulinivorans-1.0.1_Cont437.1, whole genome shotgun sequence (131535 bp)
Overview 1 RT 1: 47363-56012 bp Neighborhood of RT #1 [47363, 56218] GtrA AE_Prim_S_like RVT-UG10 PMT_2 Feature: gene Location: 47363-47866 bp Ori: EEG93574.1 Feature: domain Description: GtrA Location: 47471-47849 bp Feature: domain Description: GtrA Location: 47471-47849 bp Feature: gene Location: 47909-51034 bp Feature: gene Location: 51031-53544 bp Ori: EEG93576.1 Feature: domain Description: AE_Prim_S_like Location: 51193-51391 bp Feature: domain Description: AE_Prim_S_like Location: 5 1193-5 1391 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 52387-52999 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 5 2387-5 2999 bp Feature: gene Location: 53909-55693 bp Feature: gene Location: 55715-56218 bp Ori: EEG93578.1 Feature: domain Description: PMT_2 Location: 55775-56012 bp Feature: domain Description: PMT_2 Location: 5 5 775 -5 6012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GtrA (pfam04138), AE_Prim_S_like (cl01287), RVT-UG10, PMT_2 (pfam13231)

Seq: ACFY01000067.1 Roseburia inulinivorans DSM 16841 R_inulinivorans-1.0.1_Cont147.1, whole genome shotgun sequence (2634 bp)
Overview 1 RT 1: 135-2270 bp Neighborhood of RT #1 [135, 2305] Cas2_I_II_III cas1_HMARI RVT-CRISPR Feature: gene Location: 135-395 bp Ori: EEG94368.1 Feature: domain Description: Cas2_I_II_III Location: 144-369 bp Feature: domain Description: Cas2_I_II_III Location: 144-36 9 bp Feature: gene Location: 404-1483 bp Ori: EEG94369.1 Gene: cas1 Feature: domain Description: cas1_HMARI Location: 503-1475 bp Feature: domain Description: cas1_HMARI Location: 503-1475 bp Feature: gene Location: 1484-2305 bp Ori: EEG94370.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1691-2270 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 16 91-2270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), cas1_HMARI (TIGR03641), RVT-CRISPR