myRT

myRT report for GCA_000174815.1_ASM17481v1

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Seq: ACNN01000004.1 Porphyromonas endodontalis ATCC 35406 contig00006, whole genome shotgun sequence (9583 bp)
Overview 1 RT 1: 162-5767 bp Neighborhood of RT #1 [162, 5898] DUF349 DUF349 DUF349 DUF349 DUF349 WcaG RVT-AbiP2 HTH_17 COG3177 Feature: gene Location: 162-2018 bp Ori: EEN83804.1 Feature: domain Description: DUF349 Location: 495-705 bp Feature: domain Description: DUF349 Location: 495-705 bp Feature: domain Description: DUF349 Location: 720-936 bp Feature: domain Description: DUF349 Location: 720-936 bp Feature: domain Description: DUF349 Location: 951-1182 bp Feature: domain Description: DUF349 Location: 951 -1 1 82 bp Feature: domain Description: DUF349 Location: 1197-1407 bp Feature: domain Description: DUF349 Location: 1 1 97-1 407 bp Feature: domain Description: DUF349 Location: 1428-1647 bp Feature: domain Description: DUF349 Location: 1 428-1 647 bp Feature: gene Location: 2132-3157 bp Ori: EEN83812.1 Feature: domain Description: WcaG Location: 2162-3128 bp Feature: domain Description: WcaG Location: 21 62-31 28 bp Feature: gene Location: 3370-4365 bp Ori: EEN83810.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3376-3769 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3376-3769 bp Feature: gene Location: 4870-4998 bp Feature: gene Location: 5011-5898 bp Ori: EEN83808.1 Feature: domain Description: HTH_17 Location: 5020-5140 bp Feature: domain Description: HTH_1 7 Location: 5020-51 40 bp Feature: domain Description: COG3177 Location: 5149-5767 bp Feature: domain Description: COG31 77 Location: 51 49-5767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF349 (pfam03993), WcaG (COG0451), RVT-AbiP2, HTH_17 (pfam12728), COG3177 (Fic family protein )

Seq: ACNN01000012.1 Porphyromonas endodontalis ATCC 35406 contig00095, whole genome shotgun sequence (160807 bp)
Overview 1 RT 1: 66359-72958 bp Neighborhood of RT #1 [66359, 72966] DUF4099 DUF3945 DUF3945 PRK07726 RVT-GII Intron_maturas2 HNHc PRK07726 DUF1896 Feature: gene Location: 66359-67750 bp Ori: EEN83266.1 Feature: domain Description: DUF4099 Location: 66740-66983 bp Feature: domain Description: DUF4099 Location: 66740-66983 bp Feature: domain Description: DUF3945 Location: 67082-67256 bp Feature: domain Description: DUF3945 Location: 67082 -672 56 bp Feature: domain Description: DUF3945 Location: 67382-67493 bp Feature: domain Description: DUF3945 Location: 67382 -67493 bp Feature: gene Location: 67785-68168 bp Ori: EEN83169.1 Feature: domain Description: PRK07726 Location: 67788-68151 bp Feature: domain Description: PRK0772 6 Location: 67788-68151 bp Feature: gene Location: 68704-70515 bp Ori: EEN83176.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68977-69799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68977-69799 bp Feature: domain Description: Intron_maturas2 Location: 69907-70213 bp Feature: domain Description: Intron_maturas2 Location: 69907-702 13 bp Feature: domain Description: HNHc Note: nucleases Location: 70351-70495 bp Feature: domain Description: HNHc Note: nucleases Location: 70351-70495 bp Feature: gene Location: 70607-72397 bp Ori: EEN83247.1 Feature: domain Description: PRK07726 Location: 70631-72197 bp Feature: domain Description: PRK0772 6 Location: 70631-72 197 bp Feature: gene Location: 72535-72966 bp Ori: EEN83284.1 Feature: domain Description: DUF1896 Location: 72550-72958 bp Feature: domain Description: DUF1896 Location: 72 550-72 958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4099 (pfam13351), DUF3945 (pfam13101), PRK07726 (DNA topoisomerase 3), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1896 (pfam08989)