myRT

myRT report for GCA_000175775.1_ASM17577v1

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Seq: ACXP02000004.1 Thermoanaerobacter sp. X561 ctg53, whole genome shotgun sequence (132429 bp)
Overview 1 RT 1: 42538-47870 bp Neighborhood of RT #1 [42538, 47893] DUF4314 RVT-GII GIIM ParB_N_like_MT YhdJ PRK12459 Feature: gene Location: 42538-42765 bp Feature: domain Description: DUF4314 Location: 42556-42757 bp Feature: domain Description: DUF431 4 Location: 42556-42757 bp Feature: gene Location: 42765-43454 bp Feature: gene Location: 43606-44889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43855-44539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43855-44539 bp Feature: domain Description: GIIM Note: maturase Location: 44608-44842 bp Feature: domain Description: GIIM Note: maturase Location: 44608-44842 bp Feature: gene Location: 45481-46719 bp Feature: domain Description: ParB_N_like_MT Location: 45520-45769 bp Feature: domain Description: ParB_N_like_MT Location: 45520-45769 bp Feature: domain Description: YhdJ Location: 45949-46627 bp Feature: domain Description: YhdJ Location: 45949-46627 bp Feature: gene Location: 46700-47893 bp Feature: domain Description: PRK12459 Location: 46721-47870 bp Feature: domain Description: PRK1 2459 Location: 46721 -47870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4314 (pfam14192), RVT-GII, GIIM (pfam08388), ParB_N_like_MT (cd16844), YhdJ (COG0863), PRK12459 (S-adenosylmethionine synthetase; Provisional)

Seq: ACXP02000005.1 Thermoanaerobacter sp. X561 ctg54, whole genome shotgun sequence (90404 bp)
Overview 1 RT 1: 16266-24131 bp Neighborhood of RT #1 [16266, 24142] AcoR RVT-GII GIIM PRK12740 PRK11177 Feature: gene Location: 16266-16346 bp Feature: gene Location: 16346-18232 bp Feature: domain Description: AcoR Location: 16358-18224 bp Feature: domain Description: AcoR Location: 16358-182 2 4 bp Feature: gene Location: 18403-19815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18751-19369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18751-19369 bp Feature: domain Description: GIIM Note: maturase Location: 19420-19645 bp Feature: domain Description: GIIM Note: maturase Location: 1942 0-19645 bp Feature: gene Location: 20263-22302 bp Feature: domain Description: PRK12740 Location: 20308-22270 bp Feature: domain Description: PRK12 740 Location: 2 0308-2 2 2 70 bp Feature: gene Location: 22421-24142 bp Feature: domain Description: PRK11177 Location: 22424-24131 bp Feature: domain Description: PRK11177 Location: 2 2 42 4-2 4131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcoR (COG3284), RVT-GII, GIIM (pfam08388), PRK12740 (elongation factor G-like protein EF-G2), PRK11177 (phosphoenolpyruvate-protein phosphotransferase PtsI)

Seq: ACXP02000002.1 Thermoanaerobacter sp. X561 ctg62, whole genome shotgun sequence (913929 bp)
Overview 1 RT 1: 1-5184 bp 2 RT 2: 631720-636382 bp 3 RT 3: 821816-826013 bp Neighborhood of RT #1 [1, 5213] HTH_ARSR RVT-GII ExeA Neighborhood of RT #2 [631720, 636390] NifS CsoR-like_DUF156 RVT-GII GIIM ferrit_encaps Neighborhood of RT #3 [821816, 826030] PAP2_like_3 PAP2_like_3 RVT-GII GIIM RNaseH_like Amj Feature: gene Location: 1-186 bp Feature: gene Location: 238-561 bp Feature: domain Description: HTH_ARSR Location: 277-469 bp Feature: domain Description: HTH_ARSR Location: 277-469 bp Feature: gene Location: 1318-2229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1666-2218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1666-2218 bp Feature: gene Location: 2352-2933 bp Feature: gene Location: 4413-5213 bp Feature: domain Description: ExeA Location: 4419-5184 bp Feature: domain Description: ExeA Location: 4419-5184 bp Feature: gene Location: 631720-632964 bp Feature: domain Description: NifS Location: 631816-632953 bp Feature: domain Description: NifS Location: 63 1816-63 2953 bp Feature: gene Location: 632954-633220 bp Feature: domain Description: CsoR-like_DUF156 Location: 632975-633206 bp Feature: domain Description: CsoR-like_DUF156 Location: 63 2975-63 3 206 bp Feature: gene Location: 633387-634799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633735-634353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 3 73 5-63 43 53 bp Feature: domain Description: GIIM Note: maturase Location: 634404-634629 bp Feature: domain Description: GIIM Note: maturase Location: 63 4404-63 4629 bp Feature: gene Location: 635248-635919 bp Feature: gene Location: 636079-636390 bp Feature: domain Description: ferrit_encaps Location: 636103-636382 bp Feature: domain Description: ferrit_encaps Location: 63 6103 -63 63 82 bp Feature: gene Location: 821816-822160 bp Feature: domain Description: PAP2_like_3 Location: 821921-822161 bp Feature: domain Description: PAP2_like_3 Location: 821921-822161 bp Feature: gene Location: 822162-822698 bp Feature: domain Description: PAP2_like_3 Location: 822165-822291 bp Feature: domain Description: PAP2_like_3 Location: 822165-822291 bp Feature: gene Location: 822762-824174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823110-823728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823 110-823 728 bp Feature: domain Description: GIIM Note: maturase Location: 823779-824004 bp Feature: domain Description: GIIM Note: maturase Location: 823 779-824004 bp Feature: gene Location: 824623-825111 bp Feature: domain Description: RNaseH_like Location: 824668-825091 bp Feature: domain Description: RNaseH_like Location: 824668-825091 bp Feature: gene Location: 825221-826030 bp Feature: domain Description: Amj Location: 825260-826013 bp Feature: domain Description: Amj Location: 825260-826013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_ARSR (smart00418), NifS (COG1104), CsoR-like_DUF156 (cl00846), GIIM (pfam08388), ferrit_encaps (TIGR04535), PAP2_like_3 (cd03393), RNaseH_like (pfam04308), Amj (pfam10997)

Seq: ACXP02000001.1 Thermoanaerobacter sp. X561 ctg57, whole genome shotgun sequence (926674 bp)
Overview 1 RT 1: 58227-63200 bp 2 RT 2: 165342-173597 bp 3 RT 3: 391306-397213 bp 4 RT 4: 403435-410745 bp 5 RT 5: 917228-920435 bp Neighborhood of RT #1 [58227, 63208] T6A_YeaZ TsaE RVT-GII GIIM FmnP PRK12454 Neighborhood of RT #2 [165342, 173755] HDGYP pyruv_ox_red RVT-GII ExeA HTH_32 rve Mu-transpos_C Neighborhood of RT #3 [391306, 397221] NagE RpiR RVT-GII GIIM PRK10653 rbsC Neighborhood of RT #4 [403435, 410789] XylH PRK13549 RVT-GII GIIM xylF FGGY_D-XK_EcXK-like Neighborhood of RT #5 [917228, 920605] GGDEF TPP_E1_PDC_ADC_BCADC RVT-GII GIIM Feature: gene Location: 58227-58919 bp Feature: domain Description: T6A_YeaZ Location: 58236-58878 bp Feature: domain Description: T6A_YeaZ Location: 58236-58878 bp Feature: gene Location: 58916-59377 bp Feature: domain Description: TsaE Location: 58931-59366 bp Feature: domain Description: TsaE Location: 58931-59366 bp Feature: gene Location: 59514-60926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59862-60480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59862-604 80 bp Feature: domain Description: GIIM Note: maturase Location: 60531-60756 bp Feature: domain Description: GIIM Note: maturase Location: 60531-60756 bp Feature: gene Location: 61389-61973 bp Feature: domain Description: FmnP Location: 61404-61971 bp Feature: domain Description: FmnP Location: 614 04 -61971 bp Feature: gene Location: 62267-63208 bp Feature: domain Description: PRK12454 Location: 62270-63200 bp Feature: domain Description: PRK124 54 Location: 62270-63200 bp Feature: gene Location: 165342-165941 bp Feature: domain Description: HDGYP Location: 165393-165927 bp Feature: domain Description: HDGYP Location: 165393-165927 bp Feature: gene Location: 166423-169950 bp Feature: domain Description: pyruv_ox_red Location: 166438-169939 bp Feature: domain Description: pyruv_ox_red Location: 1664 38-169939 bp Feature: gene Location: 170402-171442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170750-171368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170750-171368 bp Feature: gene Location: 171612-172412 bp Feature: domain Description: ExeA Location: 171618-172383 bp Feature: domain Description: ExeA Location: 171618-172383 bp Feature: gene Location: 172430-173755 bp Feature: domain Description: HTH_32 Location: 172595-172826 bp Feature: domain Description: HTH_32 Location: 172595-172826 bp Feature: domain Description: rve Location: 172901-173240 bp Feature: domain Description: rve Location: 172901-17324 0 bp Feature: domain Description: Mu-transpos_C Location: 173432-173597 bp Feature: domain Description: Mu-transpos_C Location: 1734 32-173597 bp Feature: gene Location: 391306-391788 bp Feature: domain Description: NagE Location: 391330-391771 bp Feature: domain Description: NagE Location: 391330-391771 bp Feature: gene Location: 391802-392644 bp Feature: domain Description: RpiR Location: 391820-392633 bp Feature: domain Description: RpiR Location: 391820-392633 bp Feature: gene Location: 393344-394756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393692-394310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393692-394 310 bp Feature: domain Description: GIIM Note: maturase Location: 394361-394586 bp Feature: domain Description: GIIM Note: maturase Location: 394 361-394 586 bp Feature: gene Location: 395259-396182 bp Feature: domain Description: PRK10653 Location: 395349-396180 bp Feature: domain Description: PRK10653 Location: 39534 9-396180 bp Feature: gene Location: 396265-397221 bp Feature: domain Description: rbsC Location: 396292-397213 bp Feature: domain Description: rbsC Location: 396292-397213 bp Feature: gene Location: 403435-404604 bp Feature: domain Description: XylH Location: 403480-404602 bp Feature: domain Description: XylH Location: 4 034 80-4 04 602 bp Feature: gene Location: 404601-406124 bp Feature: domain Description: PRK13549 Location: 404604-406116 bp Feature: domain Description: PRK1354 9 Location: 4 04 604 -4 06116 bp Feature: gene Location: 406223-407635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406571-407189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 06571-4 07189 bp Feature: domain Description: GIIM Note: maturase Location: 407240-407465 bp Feature: domain Description: GIIM Note: maturase Location: 4 0724 0-4 074 65 bp Feature: gene Location: 408094-409200 bp Feature: domain Description: xylF Location: 408223-409162 bp Feature: domain Description: xylF Location: 4 08223-4 09162 bp Feature: gene Location: 409287-410789 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 409293-410745 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 4 09293-4 1074 5 bp Feature: gene Location: 917228-917665 bp Feature: domain Description: GGDEF Location: 917267-917651 bp Feature: domain Description: GGDEF Location: 917267-917651 bp Feature: gene Location: 917803-918591 bp Feature: domain Description: TPP_E1_PDC_ADC_BCADC Location: 917836-918265 bp Feature: domain Description: TPP_E1_PDC_ADC_BCADC Location: 917836-918265 bp Feature: gene Location: 919193-920605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919541-920159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91954 1-920159 bp Feature: domain Description: GIIM Note: maturase Location: 920210-920435 bp Feature: domain Description: GIIM Note: maturase Location: 920210-9204 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T6A_YeaZ (TIGR03725), TsaE (pfam02367), RVT-GII, GIIM (pfam08388), FmnP (COG3601), PRK12454 (carbamate kinase-like carbamoyl phosphate synthetase; Reviewed), HDGYP (COG2206), pyruv_ox_red (TIGR02176), ExeA (COG3267), HTH_32 (pfam13565)
rve (pfam00665), Mu-transpos_C (pfam09299), NagE (COG2190), RpiR (COG1737), PRK10653 (ribose ABC transporter substrate-binding protein RbsB), rbsC (PRK09512), XylH (COG4214), PRK13549 (xylose transporter ATP-binding subunit; Provisional), xylF (TIGR02634), FGGY_D-XK_EcXK-like (cd07808)
GGDEF (TIGR00254), TPP_E1_PDC_ADC_BCADC (cd02000)