myRT

myRT report for GCA_000175855.1_ASM17585v1

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Seq: ACYB01000031.1 Raphidiopsis brookii D9 D9_42, whole genome shotgun sequence (208236 bp)
Overview 1 RT 1: 151722-156862 bp Neighborhood of RT #1 [151722, 156867] DUF3598 RTPR RVT_N RVT-GII GIIM RNR_II_monomer Feature: gene Location: 151722-152576 bp Feature: domain Description: DUF3598 Location: 151731-152562 bp Feature: domain Description: DUF3598 Location: 1 51 731 -1 52562 bp Feature: gene Location: 152602-154560 bp Feature: domain Description: RTPR Location: 152605-154534 bp Feature: domain Description: RTPR Location: 1 52605-1 54534 bp Feature: gene Location: 154741-155982 bp Feature: RT Description: RVT_N Location: 154753-154906 bp Feature: RT Description: RVT_N Location: 1 54753-1 54906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154918-155524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5491 8-1 55524 bp Feature: domain Description: GIIM Note: maturase Location: 155602-155839 bp Feature: domain Description: GIIM Note: maturase Location: 1 55602-1 55839 bp Feature: gene Location: 156343-156489 bp Feature: gene Location: 156604-156867 bp Feature: domain Description: RNR_II_monomer Location: 156667-156862 bp Feature: domain Description: RNR_II_monomer Location: 1 56667-1 56862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3598 (pfam12204), RTPR (TIGR02505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RNR_II_monomer (cd01676)

Seq: ACYB01000042.1 Raphidiopsis brookii D9 D9_6, whole genome shotgun sequence (272367 bp)
Overview 1 RT 1: 228270-233032 bp Neighborhood of RT #1 [228270, 233061] TlyC DUF3157 RVT_N RVT-GII GIIM QueC MviM Feature: gene Location: 228270-228524 bp Feature: domain Description: TlyC Location: 228306-228447 bp Feature: domain Description: TlyC Location: 2 2 8306-2 2 8447 bp Feature: gene Location: 228620-229321 bp Feature: domain Description: DUF3157 Location: 228995-229151 bp Feature: domain Description: DUF3157 Location: 2 2 8995-2 2 9151 bp Feature: gene Location: 230000-231676 bp Feature: RT Description: RVT_N Location: 230027-230255 bp Feature: RT Description: RVT_N Location: 2 3002 7-2 302 55 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230291-230951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 302 91-2 30951 bp Feature: domain Description: GIIM Note: maturase Location: 231053-231284 bp Feature: domain Description: GIIM Note: maturase Location: 2 31053-2 312 84 bp Feature: gene Location: 231809-232657 bp Feature: domain Description: QueC Location: 231980-232643 bp Feature: domain Description: QueC Location: 2 31980-2 32 643 bp Feature: gene Location: 232690-233061 bp Feature: domain Description: MviM Location: 232756-233032 bp Feature: domain Description: MviM Location: 2 32 756-2 33032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TlyC (COG1253), DUF3157 (pfam11355), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QueC (pfam06508), MviM (COG0673)

Seq: ACYB01000010.1 Raphidiopsis brookii D9 D9_1471, whole genome shotgun sequence (61463 bp)
Overview 1 RT 1: 37656-41208 bp Neighborhood of RT #1 [37656, 41208] DppC KOG0404 TRX_NTR RVT-GII GIIM Feature: gene Location: 37656-38468 bp Feature: domain Description: DppC Location: 37662-38460 bp Feature: domain Description: DppC Location: 3 7662-3 8460 bp Feature: gene Location: 38572-39726 bp Feature: domain Description: KOG0404 Location: 38575-39304 bp Feature: domain Description: KOG0404 Location: 3 8575-3 93 04 bp Feature: domain Description: TRX_NTR Location: 39427-39712 bp Feature: domain Description: TRX_NTR Location: 3 9427-3 9712 bp Feature: gene Location: 39932-40852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39938-40370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 993 8-403 70 bp Feature: domain Description: GIIM Note: maturase Location: 40499-40727 bp Feature: domain Description: GIIM Note: maturase Location: 40499-40727 bp Feature: gene Location: 40861-41037 bp Feature: gene Location: 41065-41208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppC (COG1173), KOG0404 (KOG0404, Thioredoxin reductase ), TRX_NTR (cd02949), RVT-GII, GIIM (pfam08388)

Seq: ACYB01000004.1 Raphidiopsis brookii D9 D9_1144, whole genome shotgun sequence (143800 bp)
Overview 1 RT 1: 19852-23314 bp Neighborhood of RT #1 [19852, 23364] cyt_b559_alpha CpeS RVT_N RVT-GII RVT-GII GIIM CpeS HEAT Feature: gene Location: 19852-20100 bp Feature: domain Description: cyt_b559_alpha Location: 19858-20089 bp Feature: domain Description: cyt_b559_alpha Location: 19858-20089 bp Feature: gene Location: 20254-20508 bp Feature: domain Description: CpeS Location: 20257-20455 bp Feature: domain Description: CpeS Location: 20257-204 55 bp Feature: gene Location: 20671-21792 bp Feature: RT Description: RVT_N Location: 20707-20878 bp Feature: RT Description: RVT_N Location: 20707-20878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20899-21166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20899-21166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21247-21412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2124 7-214 12 bp Feature: domain Description: GIIM Note: maturase Location: 21472-21667 bp Feature: domain Description: GIIM Note: maturase Location: 214 72-21667 bp Feature: gene Location: 22315-22581 bp Feature: domain Description: CpeS Location: 22321-22549 bp Feature: domain Description: CpeS Location: 22321-2254 9 bp Feature: gene Location: 22666-23364 bp Feature: domain Description: HEAT Location: 22678-23314 bp Feature: domain Description: HEAT Location: 22678-23314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cyt_b559_alpha (TIGR01332), CpeS (pfam09367), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HEAT (sd00044)