myRT

myRT report for GCA_000176155.1_ASM17615v1

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Seq: ACZO01000007.1 Vibrio metschnikovii CIP 69.14 VIB.Contig147, whole genome shotgun sequence (877075 bp)
Overview 1 RT 1: 12093-17649 bp 2 RT 2: 82069-89530 bp Neighborhood of RT #1 [12093, 17654] pntB DUF3404 RVT-GII GIIM DUF3404 BaeS OmpR Neighborhood of RT #2 [82069, 89538] CitB CitA RVT-GII GIIM COG3333 TctC Feature: gene Location: 12093-13469 bp Feature: domain Description: pntB Location: 12096-13467 bp Feature: domain Description: pntB Location: 1 2096-1 3467 bp Feature: gene Location: 13655-14401 bp Feature: domain Description: DUF3404 Location: 13730-14342 bp Feature: domain Description: DUF3404 Location: 1 3730-1 4342 bp Feature: gene Location: 14876-16186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15092-15707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5092-1 5707 bp Feature: domain Description: GIIM Note: maturase Location: 15755-15959 bp Feature: domain Description: GIIM Note: maturase Location: 1 5755-1 5959 bp Feature: gene Location: 16307-17020 bp Feature: domain Description: DUF3404 Location: 16310-16391 bp Feature: domain Description: DUF3404 Location: 1 631 0-1 6391 bp Feature: domain Description: BaeS Location: 16391-17003 bp Feature: domain Description: BaeS Location: 1 6391 -1 7003 bp Feature: gene Location: 16995-17654 bp Feature: domain Description: OmpR Location: 17007-17649 bp Feature: domain Description: OmpR Location: 1 7007-1 7649 bp Feature: gene Location: 82069-82755 bp Feature: domain Description: CitB Location: 82081-82750 bp Feature: domain Description: CitB Location: 82081 -82750 bp Feature: gene Location: 82776-84431 bp Feature: domain Description: CitA Location: 82842-84417 bp Feature: domain Description: CitA Location: 82842-8441 7 bp Feature: gene Location: 84546-85856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84762-85377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84762-85377 bp Feature: domain Description: GIIM Note: maturase Location: 85425-85629 bp Feature: domain Description: GIIM Note: maturase Location: 85425-85629 bp Feature: gene Location: 86449-87951 bp Feature: domain Description: COG3333 Location: 86458-87934 bp Feature: domain Description: COG3333 Location: 86458-87934 bp Feature: gene Location: 88558-89538 bp Feature: domain Description: TctC Location: 88582-89530 bp Feature: domain Description: TctC Location: 88582-89530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pntB (PRK09444), DUF3404 (pfam11884), RVT-GII, GIIM (pfam08388), BaeS (COG0642), OmpR (COG0745), CitB (TIGR02484), CitA (COG3290), COG3333 (TctA family transporter ), TctC (pfam03401)

Seq: ACZO01000002.1 Vibrio metschnikovii CIP 69.14 VIB.Contig139, whole genome shotgun sequence (113727 bp)
Overview 1 RT 1: 51691-59666 bp Neighborhood of RT #1 [51691, 59666] ALAD_PBGS_aspartate_rich PRK05755 RVT-GII GIIM DDE_Tnp_1_5 Feature: gene Location: 51691-52746 bp Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 51727-52690 bp Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 5172 7-52 690 bp Feature: gene Location: 53632-56295 bp Feature: domain Description: PRK05755 Location: 53635-56293 bp Feature: domain Description: PRK05755 Location: 53635-562 93 bp Feature: gene Location: 56901-58211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57117-57732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57117-57732 bp Feature: domain Description: GIIM Note: maturase Location: 57780-57984 bp Feature: domain Description: GIIM Note: maturase Location: 57780-57984 bp Feature: gene Location: 58453-59373 bp Feature: domain Description: DDE_Tnp_1_5 Location: 58510-58840 bp Feature: domain Description: DDE_Tnp_1_5 Location: 58510-58840 bp Feature: gene Location: 59526-59666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALAD_PBGS_aspartate_rich (cd04823), PRK05755 (DNA polymerase I; Provisional), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_5 (pfam13737)

Seq: ACZO01000008.1 Vibrio metschnikovii CIP 69.14 VIB.Contig148, whole genome shotgun sequence (203374 bp)
Overview 1 RT 1: 129995-133985 bp Neighborhood of RT #1 [129995, 133996] PRK01103 RVT-GII GIIM rpmG RpmB Feature: gene Location: 129995-130804 bp Feature: domain Description: PRK01103 Location: 129998-130802 bp Feature: domain Description: PRK01103 Location: 129998-13 0802 bp Feature: gene Location: 130837-131328 bp Feature: gene Location: 131662-132972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131878-132493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 1878-13 2493 bp Feature: domain Description: GIIM Note: maturase Location: 132541-132745 bp Feature: domain Description: GIIM Note: maturase Location: 13 2541-13 2745 bp Feature: gene Location: 133579-133746 bp Feature: domain Description: rpmG Location: 133582-133738 bp Feature: domain Description: rpmG Location: 13 3 582-13 3 73 8 bp Feature: gene Location: 133760-133996 bp Feature: domain Description: RpmB Location: 133763-133985 bp Feature: domain Description: RpmB Location: 13 3 763 -13 3 985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01103 (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase), RVT-GII, GIIM (pfam08388), rpmG (PRK00595), RpmB (COG0227)

Seq: ACZO01000003.1 Vibrio metschnikovii CIP 69.14 VIB.Contig140, whole genome shotgun sequence (113990 bp)
Overview 1 RT 1: 18476-24186 bp Neighborhood of RT #1 [18476, 24191] RgfB-like COG3547 RVT_N RVT-GII GIIM INT_RitA_C_like Feature: gene Location: 18476-19273 bp Feature: domain Description: RgfB-like Location: 18479-19262 bp Feature: domain Description: RgfB-like Location: 184 79-19262 bp Feature: gene Location: 19620-20717 bp Feature: domain Description: COG3547 Location: 19737-20685 bp Feature: domain Description: COG354 7 Location: 19737-20685 bp Feature: gene Location: 21380-22852 bp Feature: RT Description: RVT_N Location: 21428-21668 bp Feature: RT Description: RVT_N Location: 214 28-21668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21716-22343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21716-2234 3 bp Feature: domain Description: GIIM Note: maturase Location: 22400-22628 bp Feature: domain Description: GIIM Note: maturase Location: 224 00-22628 bp Feature: gene Location: 23207-23446 bp Feature: gene Location: 24042-24191 bp Feature: domain Description: INT_RitA_C_like Location: 24054-24186 bp Feature: domain Description: INT_RitA_C_like Location: 24 054 -24 186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RgfB-like (cd09079), COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), INT_RitA_C_like (cd01188)

Seq: ACZO01000006.1 Vibrio metschnikovii CIP 69.14 VIB.Contig146, whole genome shotgun sequence (1866085 bp)
Overview 1 RT 1: 235244-242159 bp 2 RT 2: 834856-841787 bp 3 RT 3: 1512570-1521649 bp Neighborhood of RT #1 [235244, 242167] PRK10543 PRK10824 RVT-GII GIIM PRK07726 Cache_2 Tar PRK15048 Neighborhood of RT #2 [834856, 841816] AlsT RVT-GII GIIM RhtB ArsA Neighborhood of RT #3 [1512570, 1521720] PRK14236 PstA RVT-GII GIIM COG4590 poly_P_kin Feature: gene Location: 235244-235828 bp Feature: domain Description: PRK10543 Location: 235247-235823 bp Feature: domain Description: PRK105 43 Location: 235 247-235 823 bp Feature: gene Location: 236150-236485 bp Feature: domain Description: PRK10824 Location: 236156-236480 bp Feature: domain Description: PRK10824 Location: 23615 6-236480 bp Feature: gene Location: 237105-238415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237321-237936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237321-237936 bp Feature: domain Description: GIIM Note: maturase Location: 237984-238188 bp Feature: domain Description: GIIM Note: maturase Location: 237984-238188 bp Feature: gene Location: 238468-240426 bp Feature: domain Description: PRK07726 Location: 238477-240388 bp Feature: domain Description: PRK07726 Location: 238477-240388 bp Feature: gene Location: 240764-242167 bp Feature: domain Description: Cache_2 Location: 240776-241025 bp Feature: domain Description: Cache_2 Location: 240776-241025 bp Feature: domain Description: Tar Location: 241163-241637 bp Feature: domain Description: Tar Location: 241163-241637 bp Feature: domain Description: PRK15048 Location: 241655-242159 bp Feature: domain Description: PRK15 048 Location: 24165 5 -24215 9 bp Feature: gene Location: 834856-835587 bp Feature: gene Location: 836504-837877 bp Feature: domain Description: AlsT Location: 836510-837839 bp Feature: domain Description: AlsT Location: 8365 10-837839 bp Feature: gene Location: 838065-839375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838281-838896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838281-838896 bp Feature: domain Description: GIIM Note: maturase Location: 838944-839148 bp Feature: domain Description: GIIM Note: maturase Location: 838944-839148 bp Feature: gene Location: 839972-840607 bp Feature: domain Description: RhtB Location: 839975-840596 bp Feature: domain Description: RhtB Location: 839975 -8405 96 bp Feature: gene Location: 840806-841816 bp Feature: domain Description: ArsA Location: 840833-841787 bp Feature: domain Description: ArsA Location: 840833-841787 bp Feature: gene Location: 1512570-1513388 bp Feature: domain Description: PRK14236 Location: 1512603-1513386 bp Feature: domain Description: PRK14236 Location: 15 12603-15 13386 bp Feature: gene Location: 1513391-1515031 bp Feature: domain Description: PstA Location: 1514177-1515011 bp Feature: domain Description: PstA Location: 15 14177-15 15 011 bp Feature: gene Location: 1515003-1516313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515219-1515834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 15 219-15 15 834 bp Feature: domain Description: GIIM Note: maturase Location: 1515882-1516086 bp Feature: domain Description: GIIM Note: maturase Location: 15 15 882-15 16086 bp Feature: gene Location: 1516945-1519146 bp Feature: domain Description: COG4590 Location: 1516960-1519144 bp Feature: domain Description: COG45 90 Location: 15 16960-15 19144 bp Feature: gene Location: 1519618-1521720 bp Feature: domain Description: poly_P_kin Location: 1519639-1521649 bp Feature: domain Description: poly_P_kin Location: 15 19639-15 21649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10543 (superoxide dismutase ), PRK10824 (Grx4 family monothiol glutaredoxin), RVT-GII, GIIM (pfam08388), PRK07726 (DNA topoisomerase 3), Cache_2 (smart01049), Tar (COG0840), PRK15048 (methyl-accepting chemotaxis protein II; Provisional), AlsT (COG1115), RhtB (COG1280)
ArsA (COG0003), PRK14236 (phosphate transporter ATP-binding protein; Provisional), PstA (COG0581), COG4590 (ABC-type uncharacterized transport system, permease component ), poly_P_kin (TIGR03705)

Seq: ACZO01000005.1 Vibrio metschnikovii CIP 69.14 VIB.Contig142, whole genome shotgun sequence (252940 bp)
Overview 1 RT 1: 103626-110265 bp Neighborhood of RT #1 [103626, 110282] groES groEL RVT_N RVT-GII GIIM HNHc SapB EFP_modif_epmB Feature: gene Location: 103626-103916 bp Feature: domain Description: groES Location: 103629-103914 bp Feature: domain Description: groES Location: 1036 29-103914 bp Feature: gene Location: 103992-105629 bp Feature: domain Description: groEL Location: 103998-105618 bp Feature: domain Description: groEL Location: 103998-1056 18 bp Feature: gene Location: 106719-108392 bp Feature: RT Description: RVT_N Location: 106770-107013 bp Feature: RT Description: RVT_N Location: 106 770-107013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107058-107703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107058-107703 bp Feature: domain Description: GIIM Note: maturase Location: 107757-107988 bp Feature: domain Description: GIIM Note: maturase Location: 107757-107988 bp Feature: domain Description: HNHc Note: nucleases Location: 108216-108366 bp Feature: domain Description: HNHc Note: nucleases Location: 108216 -10836 6 bp Feature: gene Location: 108609-108821 bp Feature: domain Description: SapB Location: 108615-108792 bp Feature: domain Description: SapB Location: 1086 15-108792 bp Feature: gene Location: 109260-110282 bp Feature: domain Description: EFP_modif_epmB Location: 109308-110265 bp Feature: domain Description: EFP_modif_epmB Location: 109308-11026 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SapB (smart00741), EFP_modif_epmB (TIGR03821)