myRT

myRT report for GCA_000177675.1_ASM17767v1

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Seq: ADGX01000307.1 Frankia sp. EUN1f ctg00079, whole genome shotgun sequence (3839 bp)
Overview 1 RT 1: 1-3836 bp Neighborhood of RT #1 [1, 3839] DEDD_Tnp_IS110 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc KOG4768 Feature: gene Location: 1-244 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 34-244 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 34-244 bp Feature: gene Location: 577-930 bp Feature: domain Description: DDE_Tnp_1 Location: 592-832 bp Feature: domain Description: DDE_Tnp_1 Location: 592-832 bp Feature: gene Location: 1365-3146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1626-2421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 626-2421 bp Feature: domain Description: Intron_maturas2 Location: 2523-2754 bp Feature: domain Description: Intron_maturas2 Location: 2523-2754 bp Feature: domain Description: HNHc Note: nucleases Location: 2946-3105 bp Feature: domain Description: HNHc Note: nucleases Location: 2946-31 05 bp Feature: gene Location: 3226-3372 bp Feature: gene Location: 3566-3839 bp Feature: domain Description: KOG4768 Location: 3656-3836 bp Feature: domain Description: KOG4768 Location: 3656-3836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DDE_Tnp_1 (pfam01609)

Seq: ADGX01000106.1 Frankia sp. EUN1f ctg00355, whole genome shotgun sequence (29252 bp)
Overview 1 RT 1: 25615-29125 bp Neighborhood of RT #1 [25615, 29184] HxlR GGDEF RVT-GII GIIM HTH_38 Feature: gene Location: 25615-25983 bp Feature: domain Description: HxlR Location: 25654-25975 bp Feature: domain Description: HxlR Location: 2 5654-2 5975 bp Feature: gene Location: 26171-27805 bp Feature: domain Description: GGDEF Location: 27236-27602 bp Feature: domain Description: GGDEF Location: 2 72 36-2 7602 bp Feature: gene Location: 27717-28352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27720-27966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 772 0-2 7966 bp Feature: domain Description: GIIM Note: maturase Location: 28044-28263 bp Feature: domain Description: GIIM Note: maturase Location: 2 8044-2 82 63 bp Feature: gene Location: 28765-29184 bp Feature: domain Description: HTH_38 Location: 28996-29125 bp Feature: domain Description: HTH_38 Location: 2 8996-2 912 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), GGDEF (TIGR00254), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936)

Seq: ADGX01000319.1 Frankia sp. EUN1f ctg00427, whole genome shotgun sequence (3079 bp)
Overview 1 RT 1: 1-2961 bp Neighborhood of RT #1 [1, 3079] RVT-GII Intron_maturas2 HNHc HTH_32 Feature: gene Location: 1-104 bp Feature: gene Location: 684-2471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945-1740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945-1740 bp Feature: domain Description: Intron_maturas2 Location: 1851-2073 bp Feature: domain Description: Intron_maturas2 Location: 1851-2073 bp Feature: domain Description: HNHc Note: nucleases Location: 2283-2427 bp Feature: domain Description: HNHc Note: nucleases Location: 2283 -2427 bp Feature: gene Location: 2487-3079 bp Feature: domain Description: HTH_32 Location: 2757-2961 bp Feature: domain Description: HTH_3 2 Location: 2757-2961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: ADGX01000143.1 Frankia sp. EUN1f ctg00054, whole genome shotgun sequence (21423 bp)
Overview 1 RT 1: 15226-17249 bp Neighborhood of RT #1 [15226, 17249] pcaJ_scoB_fam RVT-GII GIIM Feature: gene Location: 15226-15330 bp Feature: gene Location: 15314-15964 bp Feature: domain Description: pcaJ_scoB_fam Location: 15323-15947 bp Feature: domain Description: pcaJ_scoB_fam Location: 15323-1594 7 bp Feature: gene Location: 16152-16601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16158-16293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16158-16293 bp Feature: domain Description: GIIM Note: maturase Location: 16371-16581 bp Feature: domain Description: GIIM Note: maturase Location: 16371-16581 bp Feature: gene Location: 16790-17041 bp Feature: gene Location: 17103-17249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcaJ_scoB_fam (TIGR02428), RVT-GII, GIIM (pfam08388)

Seq: ADGX01000287.1 Frankia sp. EUN1f ctg00420, whole genome shotgun sequence (4875 bp)
Overview 1 RT 1: 1388-4875 bp Neighborhood of RT #1 [1388, 4875] Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM Feature: gene Location: 1388-3406 bp Feature: domain Description: Resolvase Location: 1397-1835 bp Feature: domain Description: Resolvase Location: 1397-1835 bp Feature: domain Description: Recombinase Location: 1928-2288 bp Feature: domain Description: Recombinase Location: 1928-2288 bp Feature: domain Description: Zn_ribbon_recom Location: 2330-2519 bp Feature: domain Description: Zn_ribbon_recom Location: 2330-25 19 bp Feature: gene Location: 3535-3861 bp Feature: gene Location: 4025-4372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4028-4274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4028-4274 bp Feature: gene Location: 4369-4650 bp Feature: domain Description: GIIM Note: maturase Location: 4372-4573 bp Feature: domain Description: GIIM Note: maturase Location: 4372-45 73 bp Feature: gene Location: 4681-4875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388)

Seq: ADGX01000196.1 Frankia sp. EUN1f ctg00391, whole genome shotgun sequence (14405 bp)
Overview 1 RT 1: 1-4981 bp Neighborhood of RT #1 [1, 5088] COG3547 Rve RVT-GII DUF3073 SUL1 Feature: gene Location: 1-974 bp Feature: domain Description: COG3547 Location: 67-955 bp Feature: domain Description: COG3547 Location: 6 7-955 bp Feature: gene Location: 1252-1470 bp Feature: domain Description: Rve Location: 1309-1435 bp Feature: domain Description: Rve Location: 1309-1435 bp Feature: gene Location: 2108-3037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2228-2627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2228-26 27 bp Feature: gene Location: 3038-3238 bp Feature: domain Description: DUF3073 Location: 3044-3191 bp Feature: domain Description: DUF3073 Location: 3044-3191 bp Feature: gene Location: 3319-5088 bp Feature: domain Description: SUL1 Location: 3403-4981 bp Feature: domain Description: SUL1 Location: 3403-4981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), COG3547 (Transposase ), RVT-GII, DUF3073 (pfam11273), SUL1 (COG0659)

Seq: ADGX01000111.1 Frankia sp. EUN1f ctg00392, whole genome shotgun sequence (28439 bp)
Overview 1 RT 1: 25285-28174 bp Neighborhood of RT #1 [25285, 28239] InsE RVT-GII GIIM Feature: gene Location: 25285-25527 bp Feature: gene Location: 26122-26415 bp Feature: domain Description: InsE Location: 26131-26389 bp Feature: domain Description: InsE Location: 26131-26389 bp Feature: gene Location: 26986-28239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27202-27862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 202-27 862 bp Feature: domain Description: GIIM Note: maturase Location: 27940-28174 bp Feature: domain Description: GIIM Note: maturase Location: 27 940-2817 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: ADGX01000326.1 Frankia sp. EUN1f ctg00428, whole genome shotgun sequence (2796 bp)
Overview 1 RT 1: 1-2078 bp Neighborhood of RT #1 [1, 2182] RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 1-637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-268 bp Feature: domain Description: GIIM Note: maturase Location: 364-580 bp Feature: domain Description: GIIM Note: maturase Location: 364-58 0 bp Feature: gene Location: 640-1182 bp Feature: gene Location: 1802-2182 bp Feature: domain Description: HTH_Tnp_1 Location: 1844-2078 bp Feature: domain Description: HTH_Tnp_1 Location: 18 44-2078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527)