myRT

myRT report for GCA_000178215.1_ASM17821v1

Download annotations/find similar RTs

Seq: ADKP01000063.1 Bacteroides xylanisolvens SD CC 1b contig00143, whole genome shotgun sequence (54913 bp)
Overview 1 RT 1: 614-12988 bp Neighborhood of RT #1 [614, 13038] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 614-1438 bp Feature: domain Description: PDDEXK_2 Location: 635-1313 bp Feature: domain Description: PDDEXK_2 Location: 635-1 31 3 bp Feature: gene Location: 1607-3814 bp Feature: gene Location: 4022-5152 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4343-4886 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4343-4886 bp Feature: gene Location: 5203-11259 bp Feature: domain Description: DUF4011 Location: 6448-6961 bp Feature: domain Description: DUF401 1 Location: 6448-6961 bp Feature: domain Description: DEXXQc_SF1 Location: 7300-7729 bp Feature: domain Description: DEXXQc_SF1 Location: 7300-7729 bp Feature: domain Description: DEXXQc_SF1 Location: 8731-9487 bp Feature: domain Description: DEXXQc_SF1 Location: 8731 -9487 bp Feature: domain Description: TIGR00376 Location: 9616-10006 bp Feature: domain Description: TIGR00376 Location: 961 6-1 0006 bp Feature: domain Description: MTES_1575 Location: 10159-10444 bp Feature: domain Description: MTES_1 575 Location: 1 01 59-1 0444 bp Feature: domain Description: DUF3320 Location: 10774-10909 bp Feature: domain Description: DUF3320 Location: 1 0774-1 0909 bp Feature: gene Location: 11341-13038 bp Feature: domain Description: rpsA Location: 11410-12988 bp Feature: domain Description: rpsA Location: 1 1 41 0-1 2988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: ADKP01000098.1 Bacteroides xylanisolvens SD CC 1b contig00241, whole genome shotgun sequence (2428 bp)
Overview 1 RT 1: 137-1418 bp Neighborhood of RT #1 [137, 1792] RVT_N RVT-GII GIIM Feature: gene Location: 137-1792 bp Feature: RT Description: RVT_N Location: 194-431 bp Feature: RT Description: RVT_N Location: 194-431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482-1130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 -1130 bp Feature: domain Description: GIIM Note: maturase Location: 1187-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1187-1418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ADKP01000088.1 Bacteroides xylanisolvens SD CC 1b contig00211, whole genome shotgun sequence (179441 bp)
Overview 1 RT 1: 56345-61758 bp Neighborhood of RT #1 [56345, 61775] DUF1566 Avd_like RVT-DGRs MurNAc-LAA Feature: gene Location: 56345-57133 bp Feature: domain Description: DUF1566 Location: 56858-57122 bp Feature: domain Description: DUF1566 Location: 56858-57122 bp Feature: gene Location: 58115-58522 bp Feature: domain Description: Avd_like Location: 58148-58457 bp Feature: domain Description: Avd_like Location: 58148-58457 bp Feature: gene Location: 58537-59958 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58912-59638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58912-5963 8 bp Feature: gene Location: 60397-60690 bp Feature: gene Location: 61197-61775 bp Feature: domain Description: MurNAc-LAA Location: 61203-61758 bp Feature: domain Description: MurNAc-LAA Location: 61203 -61758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, MurNAc-LAA (cl02713)

Seq: ADKP01000128.1 Bacteroides xylanisolvens SD CC 1b contig00200, whole genome shotgun sequence (92762 bp)
Overview 1 RT 1: 22508-29147 bp Neighborhood of RT #1 [22508, 29203] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 22508-24211 bp Feature: domain Description: REC Location: 23327-23558 bp Feature: domain Description: REC Location: 23327-23558 bp Feature: gene Location: 24208-24852 bp Feature: gene Location: 24830-27049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25031-25616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25031-25616 bp Feature: gene Location: 27286-28290 bp Feature: domain Description: Phage_int_SAM_5 Location: 27358-27601 bp Feature: domain Description: Phage_int_SAM_5 Location: 27358-27601 bp Feature: domain Description: INTN1_C_like Location: 27682-28204 bp Feature: domain Description: INTN1_C_like Location: 27682-28204 bp Feature: gene Location: 28625-29203 bp Feature: domain Description: NGN_SP_UpxY Location: 28703-28985 bp Feature: domain Description: NGN_SP_UpxY Location: 28703-28985 bp Feature: domain Description: KOW_NusG Location: 29036-29147 bp Feature: domain Description: KOW_NusG Location: 29036-2914 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: ADKP01000116.1 Bacteroides xylanisolvens SD CC 1b contig00188, whole genome shotgun sequence (10965 bp)
Overview 1 RT 1: 428-5404 bp Neighborhood of RT #1 [428, 5418] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 428-598 bp Feature: domain Description: DUF3875 Location: 437-593 bp Feature: domain Description: DUF3875 Location: 437-5 93 bp Feature: gene Location: 695-2524 bp Feature: domain Description: Bac_Flav_CT_G Location: 698-2510 bp Feature: domain Description: Bac_Flav_CT_G Location: 698-25 10 bp Feature: gene Location: 3059-4882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3335-4157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3335 -415 7 bp Feature: domain Description: Intron_maturas2 Location: 4232-4547 bp Feature: domain Description: Intron_maturas2 Location: 4232-45 47 bp Feature: domain Description: HNHc Note: nucleases Location: 4703-4853 bp Feature: domain Description: HNHc Note: nucleases Location: 4703-485 3 bp Feature: gene Location: 4960-5238 bp Feature: domain Description: Bac_Flav_CT_G Location: 4978-5236 bp Feature: domain Description: Bac_Flav_CT_G Location: 4978-5 236 bp Feature: gene Location: 5245-5418 bp Feature: domain Description: Bac_Flav_CT_G Location: 5248-5404 bp Feature: domain Description: Bac_Flav_CT_G Location: 5 248-5 404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783)

Seq: ADKP01000084.1 Bacteroides xylanisolvens SD CC 1b contig00052, whole genome shotgun sequence (60820 bp)
Overview 1 RT 1: 50762-54485 bp Neighborhood of RT #1 [50762, 54485] dnaG RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 50762-50920 bp Feature: domain Description: dnaG Location: 50831-50912 bp Feature: domain Description: dnaG Location: 50831-50912 bp Feature: gene Location: 51068-51208 bp Feature: gene Location: 51470-53299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51755-52577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51755-52577 bp Feature: domain Description: Intron_maturas2 Location: 52646-52955 bp Feature: domain Description: Intron_maturas2 Location: 526 46 -52955 bp Feature: gene Location: 53448-54197 bp Feature: domain Description: Toprim_2 Location: 53820-54102 bp Feature: domain Description: Toprim_2 Location: 53820-54102 bp Feature: gene Location: 54324-54485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: ADKP01000078.1 Bacteroides xylanisolvens SD CC 1b contig00015, whole genome shotgun sequence (36529 bp)
Overview 1 RT 1: 11680-18320 bp Neighborhood of RT #1 [11680, 18781] DUF4134 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 11680-12342 bp Feature: gene Location: 12423-12809 bp Feature: domain Description: DUF4134 Location: 12531-12804 bp Feature: domain Description: DUF4134 Location: 12531-12804 bp Feature: gene Location: 13419-15236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13692-14511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13692-14511 bp Feature: domain Description: Intron_maturas2 Location: 14586-14913 bp Feature: domain Description: Intron_maturas2 Location: 14586-14913 bp Feature: domain Description: HNHc Note: nucleases Location: 15066-15213 bp Feature: domain Description: HNHc Note: nucleases Location: 15066-15213 bp Feature: gene Location: 15447-18143 bp Feature: domain Description: Bac_Flav_CT_G Location: 15633-18117 bp Feature: domain Description: Bac_Flav_CT_G Location: 15633-18117 bp Feature: gene Location: 18155-18781 bp Feature: domain Description: DUF4141 Location: 18164-18320 bp Feature: domain Description: DUF4141 Location: 18164-18320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4141 (pfam13605)