myRT

myRT report for GCA_000178275.1_ASM17827v1

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Seq: ADMO01000023.1 Bacteroides ovatus SD CMC 3f contig00010, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 646-1921 bp Neighborhood of RT #1 [646, 2298] RVT_N RVT-GII GIIM Feature: gene Location: 646-2298 bp Ori: EFF54109.1 Feature: domain Description: RVT_N Location: 700-943 bp Feature: domain Description: RVT_N Location: 700-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-1636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-1 636 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1921 bp Feature: domain Description: GIIM Note: maturase Location: 1 690-1 921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ADMO01000081.1 Bacteroides ovatus SD CMC 3f contig00127, whole genome shotgun sequence (2511 bp)
Overview 1 RT 1: 590-2372 bp Neighborhood of RT #1 [590, 2398] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 590-2398 bp Ori: EFF52083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 854-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 854-1676 bp Feature: domain Description: Intron_maturas2 Location: 1745-2057 bp Feature: domain Description: Intron_maturas2 Location: 1745-2 057 bp Feature: domain Description: HNHc Note: nucleases Location: 2231-2372 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 31-2 372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: ADMO01000036.1 Bacteroides ovatus SD CMC 3f contig00083, whole genome shotgun sequence (76913 bp)
Overview 1 RT 1: 26598-31301 bp Neighborhood of RT #1 [26598, 31321] DUF1566 Avd_like RVT-DGRs PRK13479 phosphonatase Feature: gene Location: 26598-27410 bp Ori: EFF53556.1 Feature: domain Description: DUF1566 Location: 27132-27384 bp Feature: domain Description: DUF1566 Location: 2713 2-273 84 bp Feature: gene Location: 27556-27936 bp Ori: EFF53557.1 Feature: domain Description: Avd_like Location: 27583-27889 bp Feature: domain Description: Avd_like Location: 27583 -27889 bp Feature: gene Location: 27951-29372 bp Ori: EFF53558.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28323-29049 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 283 23 -29049 bp Feature: gene Location: 29679-30461 bp Ori: EFF53559.1 Feature: domain Description: PRK13479 Location: 29685-30396 bp Feature: domain Description: PRK13 479 Location: 29685-3 03 96 bp Feature: gene Location: 30536-31321 bp Ori: EFF53560.1 Gene: phnX Feature: domain Description: phosphonatase Location: 30545-31301 bp Feature: domain Description: phosphonatase Location: 3 0545-3 13 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, PRK13479 (2-aminoethylphosphonate--pyruvate transaminase; Provisional), phosphonatase (TIGR01422)

Seq: ADMO01000010.1 Bacteroides ovatus SD CMC 3f contig00043, whole genome shotgun sequence (66712 bp)
Overview 1 RT 1: 35878-42089 bp Neighborhood of RT #1 [35878, 42100] SusD-like_3 SusD_RagB GDPD_like_2 RVT_N RVT-GII Mfa_like_1 DUF1566 Feature: gene Location: 35878-37770 bp Ori: EFF54390.1 Feature: domain Description: SusD-like_3 Location: 36232-36589 bp Feature: domain Description: SusD-like_3 Location: 36232-36589 bp Feature: domain Description: SusD_RagB Location: 36931-37768 bp Feature: domain Description: SusD_RagB Location: 36931-37768 bp Feature: gene Location: 37814-38575 bp Ori: EFF54391.1 Feature: domain Description: GDPD_like_2 Location: 37883-38540 bp Feature: domain Description: GDPD_like_2 Location: 37883-3854 0 bp Feature: gene Location: 39547-39897 bp Ori: EFF54392.1 Feature: domain Description: RVT_N Location: 39550-39748 bp Feature: domain Description: RVT_N Location: 39550-3974 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39802-39871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39802-39871 bp Feature: gene Location: 40340-40483 bp Feature: gene Location: 40820-42100 bp Ori: EFF54394.1 Feature: domain Description: Mfa_like_1 Location: 40892-41303 bp Feature: domain Description: Mfa_like_1 Location: 4 0892-4 1303 bp Feature: domain Description: DUF1566 Location: 41789-42089 bp Feature: domain Description: DUF1566 Location: 4 1789-4 2089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD-like_3 (pfam14322), SusD_RagB (pfam07980), GDPD_like_2 (cd08582), RVT_N (pfam13655), RVT-GII, Mfa_like_1 (pfam13149), DUF1566 (pfam07603)

Seq: ADMO01000126.1 Bacteroides ovatus SD CMC 3f contig00128, whole genome shotgun sequence (163779 bp)
Overview 1 RT 1: 49625-54225 bp Neighborhood of RT #1 [49625, 54242] DUF1566 Avd_like RVT-DGRs MurNAc-LAA Feature: gene Location: 49625-50434 bp Ori: EFF50632.1 Feature: domain Description: DUF1566 Location: 50156-50405 bp Feature: domain Description: DUF15 66 Location: 5 015 6-5 0405 bp Feature: gene Location: 50581-50988 bp Ori: EFF50633.1 Feature: domain Description: Avd_like Location: 50614-50923 bp Feature: domain Description: Avd_like Location: 5 0614-5 0923 bp Feature: gene Location: 51003-52424 bp Ori: EFF50634.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51378-52104 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 1378-5 2104 bp Feature: gene Location: 53153-53680 bp Feature: gene Location: 53664-54242 bp Ori: EFF50636.1 Feature: domain Description: MurNAc-LAA Location: 53670-54225 bp Feature: domain Description: MurNAc-LAA Location: 5 3670-5 4225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, MurNAc-LAA (cl02713)

Seq: ADMO01000106.1 Bacteroides ovatus SD CMC 3f contig00011, whole genome shotgun sequence (2407 bp)
Overview 1 RT 1: 635-1910 bp Neighborhood of RT #1 [635, 2314] RVT_N RVT-GII GIIM Feature: gene Location: 635-2314 bp Ori: EFF51443.1 Feature: domain Description: RVT_N Location: 689-932 bp Feature: domain Description: RVT_N Location: 6 89-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-1625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-16 25 bp Feature: domain Description: GIIM Note: maturase Location: 1676-1910 bp Feature: domain Description: GIIM Note: maturase Location: 16 76 -1910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ADMO01000061.1 Bacteroides ovatus SD CMC 3f contig00142, whole genome shotgun sequence (129159 bp)
Overview 1 RT 1: 68251-79951 bp Neighborhood of RT #1 [68251, 79951] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons RVT-Retrons Feature: gene Location: 68251-70053 bp Ori: EFF52616.1 Gene: rpsA Feature: domain Description: rpsA Location: 68320-69937 bp Feature: domain Description: rpsA Location: 68320-69937 bp Feature: gene Location: 70222-76107 bp Ori: EFF52617.1 Feature: domain Description: DUF4011 Location: 71380-71893 bp Feature: domain Description: DUF4011 Location: 7 1380-7 1893 bp Feature: domain Description: DEXXQc_SF1 Location: 72232-73096 bp Feature: domain Description: DEXXQc_SF1 Location: 7 2232-7 3096 bp Feature: domain Description: DEXXQc_SF1 Location: 73660-74419 bp Feature: domain Description: DEXXQc_SF1 Location: 7 3660-7 4419 bp Feature: domain Description: TIGR00376 Location: 74551-74938 bp Feature: domain Description: TIGR0037 6 Location: 7 4551-7 4938 bp Feature: domain Description: MTES_1575 Location: 75091-75376 bp Feature: domain Description: MTES_157 5 Location: 7 5091-7 537 6 bp Feature: domain Description: DUF3320 Location: 75616-75757 bp Feature: domain Description: DUF3320 Location: 7 5616-7 57 57 bp Feature: gene Location: 76109-76690 bp Ori: EFF52618.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76112-76424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 6112-7 6424 bp Feature: gene Location: 76687-77238 bp Ori: EFF52619.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77008-77212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 7 008-7 7 212 bp Feature: gene Location: 77443-79554 bp Feature: gene Location: 79790-79951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: ADMO01000009.1 Bacteroides ovatus SD CMC 3f contig00015, whole genome shotgun sequence (2489 bp)
Overview 1 RT 1: 567-2031 bp Neighborhood of RT #1 [567, 2375] RVT-GII Intron_maturas2 Feature: gene Location: 567-2375 bp Ori: EFF54418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 31-1653 bp Feature: domain Description: Intron_maturas2 Location: 1722-2031 bp Feature: domain Description: Intron_maturas2 Location: 1722-2031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: ADMO01000008.1 Bacteroides ovatus SD CMC 3f contig00133, whole genome shotgun sequence (96037 bp)
Overview 1 RT 1: 605-2950 bp Neighborhood of RT #1 [605, 2976] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 605-2428 bp Ori: EFF54419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1703 bp Feature: domain Description: Intron_maturas2 Location: 1778-2093 bp Feature: domain Description: Intron_maturas2 Location: 1778-209 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2249-2399 bp Feature: domain Description: HNHc Note: nucleases Location: 2249 -239 9 bp Feature: gene Location: 2506-2784 bp Ori: EFF54420.1 Feature: domain Description: Bac_Flav_CT_G Location: 2524-2782 bp Feature: domain Description: Bac_Flav_CT_G Location: 2524-2782 bp Feature: gene Location: 2791-2976 bp Ori: EFF54421.1 Feature: domain Description: Bac_Flav_CT_G Location: 2794-2950 bp Feature: domain Description: Bac_Flav_CT_G Location: 279 4-29 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)