myRT

myRT report for GCA_000178295.1_ASM17829v1

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Seq: ADMP01000163.1 Bacteroides xylanisolvens SD CC 2a contig00204, whole genome shotgun sequence (14730 bp)
Overview 1 RT 1: 4570-11671 bp Neighborhood of RT #1 [4570, 11671] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 4570-5196 bp Ori: EFF57127.1 Feature: domain Description: DUF4141 Location: 4579-4735 bp Feature: domain Description: DUF41 41 Location: 4579-4735 bp Feature: gene Location: 5208-7904 bp Ori: EFF57128.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 5394-7878 bp Feature: domain Description: Bac_Flav_CT_G Location: 5394-7878 bp Feature: gene Location: 8115-9932 bp Ori: EFF57129.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8388-9207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8388-9207 bp Feature: domain Description: Intron_maturas2 Location: 9282-9609 bp Feature: domain Description: Intron_maturas2 Location: 9282-9609 bp Feature: domain Description: HNHc Note: nucleases Location: 9762-9909 bp Feature: domain Description: HNHc Note: nucleases Location: 9762-9909 bp Feature: gene Location: 10542-10928 bp Ori: EFF57130.1 Feature: domain Description: DUF4134 Location: 10650-10923 bp Feature: domain Description: DUF41 34 Location: 1 0650-1 0923 bp Feature: gene Location: 11009-11671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: ADMP01000239.1 Bacteroides xylanisolvens SD CC 2a contig00265, whole genome shotgun sequence (2429 bp)
Overview 1 RT 1: 138-1419 bp Neighborhood of RT #1 [138, 1793] RVT_N RVT-GII GIIM Feature: gene Location: 138-1793 bp Ori: EFF55937.1 Feature: domain Description: RVT_N Location: 195-432 bp Feature: domain Description: RVT_N Location: 195-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1131 bp Feature: domain Description: GIIM Note: maturase Location: 1188-1419 bp Feature: domain Description: GIIM Note: maturase Location: 1188-1419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ADMP01000216.1 Bacteroides xylanisolvens SD CC 2a contig00320, whole genome shotgun sequence (54701 bp)
Overview 1 RT 1: 2126-13431 bp Neighborhood of RT #1 [2126, 13562] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 2126-4237 bp Feature: gene Location: 4445-4789 bp Feature: gene Location: 4756-5574 bp Ori: EFF56351.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4765-5308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4765-53 08 bp Feature: gene Location: 5625-11666 bp Ori: EFF56352.1 Feature: domain Description: DUF4011 Location: 6855-7368 bp Feature: domain Description: DUF4011 Location: 6855-73 68 bp Feature: domain Description: DEXXQc_SF1 Location: 7707-8136 bp Feature: domain Description: DEXXQc_SF1 Location: 7707-813 6 bp Feature: domain Description: DEXXQc_SF1 Location: 9138-9894 bp Feature: domain Description: DEXXQc_SF1 Location: 913 8-9894 bp Feature: domain Description: TIGR00376 Location: 10023-10413 bp Feature: domain Description: TIGR003 76 Location: 10023 -10413 bp Feature: domain Description: MTES_1575 Location: 10566-10851 bp Feature: domain Description: MTES_1575 Location: 10566-10851 bp Feature: domain Description: DUF3320 Location: 11181-11316 bp Feature: domain Description: DUF3 3 20 Location: 11181-113 16 bp Feature: gene Location: 11763-13562 bp Ori: EFF56353.1 Gene: rpsA Feature: domain Description: rpsA Location: 11832-13431 bp Feature: domain Description: rpsA Location: 1183 2-13 43 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: ADMP01000012.1 Bacteroides xylanisolvens SD CC 2a contig00267, whole genome shotgun sequence (24564 bp)
Overview 1 RT 1: 2113-8867 bp Neighborhood of RT #1 [2113, 8869] Mfa_like_1 Mfa_like_1 DUF1566 RVT_N RVT-GII GDPD_like_2 SusD-like_3 SusD_RagB Feature: gene Location: 2113-2565 bp Ori: EFF59661.1 Feature: domain Description: Mfa_like_1 Location: 2404-2551 bp Feature: domain Description: Mfa_like_1 Location: 24 04 -2551 bp Feature: gene Location: 2647-3927 bp Ori: EFF59662.1 Feature: domain Description: Mfa_like_1 Location: 2719-3130 bp Feature: domain Description: Mfa_like_1 Location: 2719-3130 bp Feature: domain Description: DUF1566 Location: 3616-3916 bp Feature: domain Description: DUF1566 Location: 3616-3916 bp Feature: gene Location: 4850-5200 bp Ori: EFF59663.1 Feature: domain Description: RVT_N Location: 4853-5051 bp Feature: domain Description: RVT_N Location: 4 853-5051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5105-5174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5105-5174 bp Feature: gene Location: 6172-6933 bp Ori: EFF59664.1 Feature: domain Description: GDPD_like_2 Location: 6241-6898 bp Feature: domain Description: GDPD_like_2 Location: 624 1-6898 bp Feature: gene Location: 6977-8869 bp Ori: EFF59665.1 Feature: domain Description: SusD-like_3 Location: 7331-7688 bp Feature: domain Description: SusD-like_3 Location: 7331-7688 bp Feature: domain Description: SusD_RagB Location: 8030-8867 bp Feature: domain Description: SusD_RagB Location: 8030-8867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), DUF1566 (pfam07603), RVT_N (pfam13655), RVT-GII, GDPD_like_2 (cd08582), SusD-like_3 (pfam14322), SusD_RagB (pfam07980)

Seq: ADMP01000204.1 Bacteroides xylanisolvens SD CC 2a contig00255, whole genome shotgun sequence (60827 bp)
Overview 1 RT 1: 48926-54488 bp Neighborhood of RT #1 [48926, 54488] DUF4099 DUF3945 dnaG RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 48926-50065 bp Ori: EFF56536.1 Feature: domain Description: DUF4099 Location: 49304-49544 bp Feature: domain Description: DUF4099 Location: 49304-495 44 bp Feature: domain Description: DUF3945 Location: 49655-49826 bp Feature: domain Description: DUF3945 Location: 4965 5 -49826 bp Feature: gene Location: 50765-50923 bp Ori: EFF56537.1 Feature: domain Description: dnaG Location: 50834-50915 bp Feature: domain Description: dnaG Location: 5 0834-5 0915 bp Feature: gene Location: 51473-53302 bp Ori: EFF56538.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51758-52580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 175 8-5 25 80 bp Feature: domain Description: Intron_maturas2 Location: 52649-52958 bp Feature: domain Description: Intron_maturas2 Location: 5 2649-5 295 8 bp Feature: gene Location: 53451-54200 bp Ori: EFF56539.1 Feature: domain Description: Toprim_2 Location: 53823-54105 bp Feature: domain Description: Toprim_2 Location: 5 3823-5 4105 bp Feature: gene Location: 54327-54488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4099 (pfam13351), DUF3945 (pfam13101), dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: ADMP01000054.1 Bacteroides xylanisolvens SD CC 2a contig00158, whole genome shotgun sequence (38850 bp)
Overview 1 RT 1: 19335-24193 bp Neighborhood of RT #1 [19335, 24204] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 19335-19862 bp Feature: gene Location: 19859-20146 bp Feature: gene Location: 20591-22012 bp Ori: EFF58952.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20966-21692 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2096 6 -216 92 bp Feature: gene Location: 22027-22434 bp Ori: EFF58953.1 Feature: domain Description: Avd_like Location: 22060-22369 bp Feature: domain Description: Avd_like Location: 2206 0-2236 9 bp Feature: gene Location: 23416-24204 bp Ori: EFF58954.1 Feature: domain Description: DUF1566 Location: 23929-24193 bp Feature: domain Description: DUF156 6 Location: 23929-24193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: ADMP01000068.1 Bacteroides xylanisolvens SD CC 2a contig00173, whole genome shotgun sequence (6960 bp)
Overview 1 RT 1: 456-4344 bp Neighborhood of RT #1 [456, 4997] RVT-Retrons REC Feature: gene Location: 456-2675 bp Ori: EFF58694.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 657-1242 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 657 -1242 bp Feature: gene Location: 2653-3297 bp Feature: gene Location: 3294-4997 bp Ori: EFF58696.1 Feature: domain Description: REC Location: 4113-4344 bp Feature: domain Description: REC Location: 4113-4344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, REC (smart00448)

Seq: ADMP01000074.1 Bacteroides xylanisolvens SD CC 2a contig00049, whole genome shotgun sequence (9032 bp)
Overview 1 RT 1: 3604-8601 bp Neighborhood of RT #1 [3604, 8606] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Feature: gene Location: 3604-3789 bp Ori: EFF58580.1 Feature: domain Description: Bac_Flav_CT_G Location: 3607-3763 bp Feature: domain Description: Bac_Flav_CT_G Location: 3607-3763 bp Feature: gene Location: 3796-4059 bp Ori: EFF58581.1 Feature: domain Description: Bac_Flav_CT_G Location: 3808-4057 bp Feature: domain Description: Bac_Flav_CT_G Location: 38 08 -4057 bp Feature: gene Location: 4152-5975 bp Ori: EFF58582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4428-5250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4428 -5250 bp Feature: domain Description: Intron_maturas2 Location: 5325-5640 bp Feature: domain Description: Intron_maturas2 Location: 5325-5640 bp Feature: domain Description: HNHc Note: nucleases Location: 5796-5946 bp Feature: domain Description: HNHc Note: nucleases Location: 5796-5946 bp Feature: gene Location: 6510-8339 bp Ori: EFF58583.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 6513-8325 bp Feature: domain Description: Bac_Flav_CT_G Location: 6513-8 325 bp Feature: gene Location: 8436-8606 bp Ori: EFF58584.1 Feature: domain Description: DUF3875 Location: 8445-8601 bp Feature: domain Description: DUF38 75 Location: 8 445-8 601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991)