myRT

myRT report for GCA_000179455.1_ASM17945v1

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Seq: AEAX01000112.1 Lactobacillus reuteri lpuph Lreuteri_lpuph_contig_00112, whole genome shotgun sequence (1888 bp)
Overview 1 RT 1: 2-1636 bp Neighborhood of RT #1 [2, 1797] RVT-GII GIIM Feature: gene Location: 2-220 bp Feature: gene Location: 418-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1 354 bp Feature: domain Description: GIIM Note: maturase Location: 1408-1636 bp Feature: domain Description: GIIM Note: maturase Location: 1 408-1 636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AEAX01000090.1 Lactobacillus reuteri lpuph Lreuteri_lpuph_contig_00090, whole genome shotgun sequence (348 bp)
Overview 1 RT 1: 1-199 bp Neighborhood of RT #1 [1, 345] RVT-GII Feature: gene Location: 1-345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AEAX01000039.1 Lactobacillus reuteri lpuph Lreuteri_lpuph_contig_00039, whole genome shotgun sequence (24951 bp)
Overview 1 RT 1: 52-4369 bp Neighborhood of RT #1 [52, 4371] COG2865 RVT-GII group_II_RT_mat guaA Feature: gene Location: 52-1578 bp Feature: domain Description: COG2865 Location: 61-1534 bp Feature: domain Description: COG2865 Location: 61-153 4 bp Feature: gene Location: 1844-2128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850-2069 bp Feature: gene Location: 2135-2359 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2147-2351 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2147-23 51 bp Feature: gene Location: 2755-4371 bp Feature: domain Description: guaA Location: 2848-4369 bp Feature: domain Description: guaA Location: 2848-43 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, group_II_RT_mat (TIGR04416), guaA (PRK00074)

Seq: AEAX01000029.1 Lactobacillus reuteri lpuph Lreuteri_lpuph_contig_00029, whole genome shotgun sequence (111196 bp)
Overview 1 RT 1: 3-3182 bp Neighborhood of RT #1 [3, 3211] RVT-GII PRX_Atyp2cys TrmA Feature: gene Location: 3-554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-555 bp Feature: gene Location: 1042-1536 bp Feature: domain Description: PRX_Atyp2cys Location: 1099-1516 bp Feature: domain Description: PRX_Atyp2cys Location: 1099-1516 bp Feature: gene Location: 1772-3211 bp Feature: domain Description: TrmA Location: 1862-3182 bp Feature: domain Description: TrmA Location: 1862-3182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRX_Atyp2cys (cd03014), TrmA (COG2265)

Seq: AEAX01000015.1 Lactobacillus reuteri lpuph Lreuteri_lpuph_contig_00015, whole genome shotgun sequence (6656 bp)
Overview 1 RT 1: 3-3396 bp Neighborhood of RT #1 [3, 3396] PhdYeFM_antitox RVT-AbiK Feature: gene Location: 3-137 bp Feature: domain Description: PhdYeFM_antitox Location: 12-138 bp Feature: domain Description: PhdYeFM_antitox Location: 12-138 bp Feature: gene Location: 614-2548 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 1166-1559 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 1166-15 5 9 bp Feature: gene Location: 2634-3035 bp Feature: gene Location: 3124-3396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), RVT-AbiK