myRT

myRT report for GCA_000179595.2_ASM17959v2

Download annotations/find similar RTs

Seq: JH556658.1 Acetivibrio cellulolyticus CD2 genomic scaffold Acecescaffold_8, whole genome shotgun sequence (1072651 bp)
Overview 1 RT 1: 3-5351 bp 2 RT 2: 150241-169392 bp 3 RT 3: 358192-365462 bp Neighborhood of RT #1 [3, 5356] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII PRK03624 PhnB Neighborhood of RT #2 [150241, 169424] DEXDc_RapA HepA met_A_Alw26 met_A_Alw26 RVT-UG5 nitrilase YprA YprA YprA RelE UvrD UvrD Neighborhood of RT #3 [358192, 365692] RVT-UG2 PRK12451 HTH_XRE Feature: gene Location: 3-566 bp Feature: domain Description: DDE_Tnp_IS66 Location: 27-366 bp Feature: domain Description: DDE_Tnp_IS66 Location: 27-366 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 387-507 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 387-507 bp Feature: gene Location: 1048-2856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342-2050 bp Feature: domain Description: GIIM Note: maturase Location: 2176-2362 bp Feature: domain Description: GIIM Note: maturase Location: 21 76-2362 bp Feature: gene Location: 2870-3214 bp Feature: gene Location: 3951-4361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4206-4278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4206-4278 bp Feature: gene Location: 4443-4877 bp Feature: domain Description: PRK03624 Location: 4446-4836 bp Feature: domain Description: PRK03624 Location: 4446-4836 bp Feature: gene Location: 4982-5356 bp Feature: domain Description: PhnB Location: 5024-5351 bp Feature: domain Description: PhnB Location: 5024-5351 bp Feature: gene Location: 150241-153069 bp Feature: domain Description: DEXDc_RapA Location: 150565-151156 bp Feature: domain Description: DEXDc_RapA Location: 1 50565-1 51 1 56 bp Feature: domain Description: HepA Location: 151480-152041 bp Feature: domain Description: HepA Location: 1 51 480-1 52041 bp Feature: gene Location: 153074-157786 bp Feature: domain Description: met_A_Alw26 Location: 154673-154934 bp Feature: domain Description: met_A_Alw26 Location: 1 54673-1 54934 bp Feature: domain Description: met_A_Alw26 Location: 155843-156329 bp Feature: domain Description: met_A_Alw26 Location: 1 55843-1 56329 bp Feature: gene Location: 157849-160911 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 158323-158779 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 58323-1 58779 bp Feature: domain Description: nitrilase Location: 160141-160792 bp Feature: domain Description: nitrilase Location: 1 601 41 -1 60792 bp Feature: gene Location: 161005-167334 bp Feature: domain Description: YprA Location: 161227-161905 bp Feature: domain Description: YprA Location: 1 61 227-1 61 905 bp Feature: domain Description: YprA Location: 163954-164344 bp Feature: domain Description: YprA Location: 1 63954-1 64344 bp Feature: domain Description: YprA Location: 165727-165994 bp Feature: domain Description: YprA Location: 1 65727-1 65994 bp Feature: gene Location: 167334-169424 bp Feature: domain Description: RelE Location: 167352-167607 bp Feature: domain Description: RelE Location: 1 67352-1 67607 bp Feature: domain Description: UvrD Location: 168045-169146 bp Feature: domain Description: UvrD Location: 1 68045-1 691 46 bp Feature: domain Description: UvrD Location: 169185-169392 bp Feature: domain Description: UvrD Location: 1 691 85-1 69392 bp Feature: gene Location: 358192-359847 bp Feature: gene Location: 359840-361144 bp Feature: gene Location: 361675-363030 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 361858-362707 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 361 858-362707 bp Feature: gene Location: 363103-364800 bp Feature: domain Description: PRK12451 Location: 363124-364798 bp Feature: domain Description: PRK1 2451 Location: 3631 24-364798 bp Feature: gene Location: 365276-365692 bp Feature: domain Description: HTH_XRE Location: 365288-365462 bp Feature: domain Description: HTH_XRE Location: 365288-365462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), PRK03624 (putative acetyltransferase; Provisional), PhnB (COG2764), DEXDc_RapA (cd18011), HepA (COG0553), met_A_Alw26 (TIGR02987), RVT-UG5
nitrilase (cl11424), YprA (COG1205), RelE (pfam06296), UvrD (COG0210), RVT-UG2, PRK12451 (arginyl-tRNA synthetase; Reviewed), HTH_XRE (smart00530)

Seq: JH556659.1 Acetivibrio cellulolyticus CD2 genomic scaffold Acecescaffold_9, whole genome shotgun sequence (1349091 bp)
Overview 1 RT 1: 108597-113572 bp 2 RT 2: 807059-810653 bp Neighborhood of RT #1 [108597, 113736] PBP2_TMBP_like Tar RVT-GII GIIM Neighborhood of RT #2 [807059, 810653] RVT-GII GIIM DUF3189 Feature: gene Location: 108597-110006 bp Feature: domain Description: PBP2_TMBP_like Location: 108858-109950 bp Feature: domain Description: PBP2 _TMBP_like Location: 108858-109950 bp Feature: gene Location: 110323-112404 bp Feature: domain Description: Tar Location: 111193-112402 bp Feature: domain Description: Tar Location: 111193-112 402 bp Feature: gene Location: 112720-113190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112723-113116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 72 3-113116 bp Feature: gene Location: 113248-113391 bp Feature: gene Location: 113395-113736 bp Feature: domain Description: GIIM Note: maturase Location: 113413-113572 bp Feature: domain Description: GIIM Note: maturase Location: 113413-113572 bp Feature: gene Location: 807059-807235 bp Feature: gene Location: 807250-807429 bp Feature: gene Location: 807430-808842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807781-808399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807781-808399 bp Feature: domain Description: GIIM Note: maturase Location: 808453-808678 bp Feature: domain Description: GIIM Note: maturase Location: 808453-808678 bp Feature: gene Location: 809169-809678 bp Feature: domain Description: DUF3189 Location: 809178-809619 bp Feature: domain Description: DUF3189 Location: 809178-809619 bp Feature: gene Location: 809853-810653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TMBP_like (cd13585), Tar (COG0840), RVT-GII, GIIM (pfam08388), DUF3189 (pfam11385)

Seq: JH556660.1 Acetivibrio cellulolyticus CD2 genomic scaffold Acecescaffold_10, whole genome shotgun sequence (31848 bp)
Overview 1 RT 1: 4863-13083 bp 2 RT 2: 18799-31845 bp Neighborhood of RT #1 [4863, 13083] RVT-GII ParE_toxin RVT-GII Neighborhood of RT #2 [18799, 31847] RVT_N RVT-GII YkfC Asp_protease_2 RVT_N RVT-GII YkfC DUF772 RVT_N RVT-GII Feature: gene Location: 4863-5108 bp Feature: gene Location: 5327-5572 bp Feature: gene Location: 5740-6630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5995-6604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5995-6604 bp Feature: gene Location: 7037-7279 bp Feature: gene Location: 7355-7666 bp Feature: domain Description: ParE_toxin Location: 7364-7628 bp Feature: domain Description: ParE_toxin Location: 73 64-7628 bp Feature: gene Location: 8919-9149 bp Feature: gene Location: 9191-9718 bp Feature: gene Location: 10046-11914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10340-11048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 40-11048 bp Feature: gene Location: 12347-12613 bp Feature: gene Location: 12802-13083 bp Feature: gene Location: 18799-19602 bp Feature: gene Location: 20042-20452 bp Feature: gene Location: 20677-22329 bp Feature: domain Description: RVT_N Location: 20722-20962 bp Feature: domain Description: RVT_N Location: 20722-20962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21010-21658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21010-21658 bp Feature: domain Description: YkfC Location: 21802-22006 bp Feature: domain Description: YkfC Location: 21802-22006 bp Feature: gene Location: 23329-23631 bp Feature: gene Location: 23686-24081 bp Feature: domain Description: Asp_protease_2 Location: 23755-24025 bp Feature: domain Description: Asp_protease_2 Location: 23 755-24025 bp Feature: gene Location: 24522-24707 bp Feature: gene Location: 24917-26569 bp Feature: domain Description: RVT_N Location: 24962-25202 bp Feature: domain Description: RVT_N Location: 24962-25202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25250-25898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25250-25898 bp Feature: domain Description: YkfC Location: 26039-26237 bp Feature: domain Description: YkfC Location: 2603 9-2623 7 bp Feature: gene Location: 26952-27584 bp Feature: gene Location: 27761-28399 bp Feature: domain Description: DUF772 Location: 27932-28136 bp Feature: domain Description: DUF772 Location: 2793 2-2813 6 bp Feature: gene Location: 29975-30505 bp Feature: gene Location: 30589-30780 bp Feature: gene Location: 31326-31847 bp Feature: domain Description: RVT_N Location: 31371-31611 bp Feature: domain Description: RVT_N Location: 3 13 71-3 1611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31659-31845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1659-3 1845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ParE_toxin (pfam05016), RVT_N (pfam13655), YkfC (COG3344), Asp_protease_2 (pfam13650), DUF772 (pfam05598)