myRT

myRT report for GCA_000180455.1_ASM18045v1

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Seq: CACA01000266.1 Oscillatoria sp. PCC 6506 whole genome shotgun sequence, Contig301 (50582 bp)
Overview 1 RT 1: 8704-18716 bp Neighborhood of RT #1 [8704, 18716] RAMPs Cmr6_III-B RVT-CRISPR cas1 NACHT Feature: gene Location: 8704-9297 bp Feature: gene Location: 9539-11248 bp Ori: CBN56407.1 Feature: domain Description: RAMPs Location: 9728-9992 bp Feature: domain Description: RAMPs Location: 9728-9992 bp Feature: domain Description: Cmr6_III-B Location: 10202-10313 bp Feature: domain Description: Cmr6_III-B Location: 1 0202-1 031 3 bp Feature: gene Location: 12365-14368 bp Ori: CBN56408.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12554-13163 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 2554-1 31 63 bp Feature: domain Description: cas1 Location: 13373-14336 bp Feature: domain Description: cas1 Location: 1 3373-1 4336 bp Feature: gene Location: 14506-18099 bp Ori: CBN56409.1 Feature: domain Description: NACHT Location: 14920-15403 bp Feature: domain Description: NACHT Location: 1 4920-1 5403 bp Feature: gene Location: 18204-18716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAMPs (pfam03787), Cmr6_III-B (cd09661), RVT-CRISPR, cas1 (TIGR00287), NACHT (pfam05729)

Seq: CACA01000301.1 Oscillatoria sp. PCC 6506 whole genome shotgun sequence, Contig337 (47212 bp)
Overview 1 RT 1: 6756-11661 bp Neighborhood of RT #1 [6756, 11663] COG3484 RVT-Retrons PRK00331 Feature: gene Location: 6756-6893 bp Feature: gene Location: 7115-7885 bp Ori: CBN57252.1 Feature: domain Description: COG3484 Location: 7118-7856 bp Feature: domain Description: COG3484 Location: 7118-7856 bp Feature: gene Location: 7973-9373 bp Ori: CBN57253.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8519-9137 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8519-9137 bp Feature: gene Location: 9315-9512 bp Feature: gene Location: 9714-11663 bp Ori: CBN57255.1 Gene: nodM Feature: domain Description: PRK00331 Location: 9717-11661 bp Feature: domain Description: PRK00331 Location: 9717-11661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3484 (Predicted proteasome-type protease ), RVT-Retrons, PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase)

Seq: CACA01000264.1 Oscillatoria sp. PCC 6506 whole genome shotgun sequence, Contig299 (34313 bp)
Overview 1 RT 1: 18835-25076 bp Neighborhood of RT #1 [18835, 25076] HNH RVT_N RVT-GII RVT_N RVT-GII GIIM HNHc Feature: gene Location: 18835-19113 bp Feature: gene Location: 20608-20760 bp Ori: CBN56333.1 Feature: domain Description: HNH Note: nucleases Location: 20623-20728 bp Feature: domain Description: HNH Note: nucleases Location: 20623 -20728 bp Feature: gene Location: 20943-21821 bp Ori: CBN56334.1 Feature: domain Description: RVT_N Location: 20988-21228 bp Feature: domain Description: RVT_N Location: 20988-21228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21273-21723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21273 -21723 bp Feature: gene Location: 21991-22134 bp Feature: gene Location: 22234-22398 bp Feature: gene Location: 22497-24212 bp Ori: CBN56337.1 Feature: domain Description: RVT_N Location: 22539-22785 bp Feature: domain Description: RVT_N Location: 2253 9-22785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22827-23496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22827-23 496 bp Feature: domain Description: GIIM Note: maturase Location: 23595-23808 bp Feature: domain Description: GIIM Note: maturase Location: 23 595-23 808 bp Feature: domain Description: HNHc Note: nucleases Location: 24012-24165 bp Feature: domain Description: HNHc Note: nucleases Location: 24012-24165 bp Feature: gene Location: 24562-24714 bp Feature: gene Location: 24855-25076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)