myRT

myRT report for GCA_000182015.1_ASM18201v1

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Seq: ABLK01000197.1 Burkholderia ambifaria MEX-5 ctg00205, whole genome shotgun sequence (13747 bp)
Overview 1 RT 1: 4668-10166 bp Neighborhood of RT #1 [4668, 10168] MFS_MucK Histone_HNS RVT-Retrons dTDP_HR_like_SDR_e DoxX Feature: gene Location: 4668-5915 bp Ori: EDT39362.1 Feature: domain Description: MFS_MucK Location: 4758-5892 bp Feature: domain Description: MFS_MucK Location: 4758-5892 bp Feature: gene Location: 6175-6504 bp Ori: EDT39363.1 Feature: domain Description: Histone_HNS Location: 6196-6433 bp Feature: domain Description: Histone_HNS Location: 61 96-6433 bp Feature: gene Location: 6855-8204 bp Ori: EDT39364.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7320-7956 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7320-7956 bp Feature: gene Location: 8648-9592 bp Ori: EDT39365.1 Feature: domain Description: dTDP_HR_like_SDR_e Location: 8666-9551 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 8666-9551 bp Feature: gene Location: 9755-10168 bp Ori: EDT39366.1 Feature: domain Description: DoxX Location: 9788-10166 bp Feature: domain Description: DoxX Location: 9788-1 01 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, dTDP_HR_like_SDR_e (cd05254), DoxX (pfam07681)

Seq: ABLK01000493.1 Burkholderia ambifaria MEX-5 ctg00030, whole genome shotgun sequence (2980 bp)
Overview 1 RT 1: 265-2503 bp Neighborhood of RT #1 [265, 2544] RVT-GII InsE TnpB_IS66 Feature: gene Location: 265-1005 bp Ori: EDT37360.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691-1003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691-1003 bp Feature: gene Location: 1676-2218 bp Ori: EDT37361.1 Feature: domain Description: InsE Location: 1763-1943 bp Feature: domain Description: InsE Location: 1763-1943 bp Feature: gene Location: 2194-2544 bp Ori: EDT37362.1 Feature: domain Description: TnpB_IS66 Location: 2221-2503 bp Feature: domain Description: TnpB_IS66 Location: 2 2 2 1-2 503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: ABLK01000282.1 Burkholderia ambifaria MEX-5 ctg00742, whole genome shotgun sequence (9043 bp)
Overview 1 RT 1: 1624-5471 bp Neighborhood of RT #1 [1624, 5471] RVT-GII Dimer_Tnp_Tn5 Feature: gene Location: 1624-2295 bp Ori: EDT38458.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1630-2068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 0-2068 bp Feature: gene Location: 2932-3429 bp Ori: EDT38459.1 Feature: domain Description: Dimer_Tnp_Tn5 Location: 3127-3376 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3 127-3 3 76 bp Feature: gene Location: 4875-5471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Dimer_Tnp_Tn5 (pfam02281)

Seq: ABLK01000025.1 Burkholderia ambifaria MEX-5 ctg01002, whole genome shotgun sequence (44877 bp)
Overview 1 RT 1: 35764-39824 bp Neighborhood of RT #1 [35764, 39835] PRTRC_B PRTRC_F RVT-GII GIIM PRTRC_C Feature: gene Location: 35764-36492 bp Ori: EDT42975.1 Feature: domain Description: PRTRC_B Location: 35806-36475 bp Feature: domain Description: PRTRC_B Location: 35806-364 75 bp Feature: gene Location: 36504-37646 bp Ori: EDT42976.1 Feature: domain Description: PRTRC_F Location: 36609-37638 bp Feature: domain Description: PRTRC_F Location: 36609-37638 bp Feature: gene Location: 37737-39128 bp Ori: EDT42977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38067-38685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38067-38685 bp Feature: domain Description: GIIM Note: maturase Location: 38733-38955 bp Feature: domain Description: GIIM Note: maturase Location: 38733-38955 bp Feature: gene Location: 39144-39257 bp Feature: gene Location: 39617-39835 bp Ori: EDT42979.1 Feature: domain Description: PRTRC_C Location: 39632-39824 bp Feature: domain Description: PRTRC_C Location: 39632-39824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_B (TIGR03737), PRTRC_F (TIGR03742), RVT-GII, GIIM (pfam08388), PRTRC_C (TIGR03738)

Seq: ABLK01000253.1 Burkholderia ambifaria MEX-5 ctg00478, whole genome shotgun sequence (10524 bp)
Overview 1 RT 1: 8-5663 bp Neighborhood of RT #1 [8, 5668] AllE RVT-Retrons StrB Feature: gene Location: 8-163 bp Feature: gene Location: 862-1698 bp Ori: EDT38742.1 Feature: domain Description: AllE Location: 877-1678 bp Feature: domain Description: AllE Location: 877-1678 bp Feature: gene Location: 1940-3154 bp Ori: EDT38743.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2159-2813 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 215 9-2813 bp Feature: gene Location: 3329-4549 bp Feature: gene Location: 4874-5668 bp Ori: EDT38745.1 Feature: domain Description: StrB Location: 4880-5663 bp Feature: domain Description: StrB Location: 4880-5 663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AllE (COG3257), RVT-Retrons, StrB (COG3570)

Seq: ABLK01000531.1 Burkholderia ambifaria MEX-5 ctg00671, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 578-1802 bp Neighborhood of RT #1 [578, 1984] RVT-GII GIIM Feature: gene Location: 578-1984 bp Ori: EDT37268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1532 bp Feature: domain Description: GIIM Note: maturase Location: 1586-1802 bp Feature: domain Description: GIIM Note: maturase Location: 1586 -1802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ABLK01000547.1 Burkholderia ambifaria MEX-5 ctg00652, whole genome shotgun sequence (2139 bp)
Overview 1 RT 1: 329-1616 bp Neighborhood of RT #1 [329, 1798] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 329-991 bp Ori: EDT37238.1 Feature: domain Description: RVT_N Location: 404-647 bp Feature: domain Description: RVT_N Location: 404-647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692-983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692-983 bp Feature: gene Location: 992-1798 bp Ori: EDT37239.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1334 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1616 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ABLK01000226.1 Burkholderia ambifaria MEX-5 ctg00641, whole genome shotgun sequence (11721 bp)
Overview 1 RT 1: 9066-10791 bp Neighborhood of RT #1 [9066, 11642] RVT-UG7 Feature: gene Location: 9066-9248 bp Feature: gene Location: 9238-9855 bp Feature: gene Location: 9951-11642 bp Ori: EDT39024.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 10371-10791 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 10371-10791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: ABLK01000288.1 Burkholderia ambifaria MEX-5 ctg00781, whole genome shotgun sequence (8682 bp)
Overview 1 RT 1: 136-5796 bp Neighborhood of RT #1 [136, 5796] COG4584 RVT-GII DUF772 DDE_Tnp_1_6 Feature: gene Location: 136-783 bp Ori: EDT38410.1 Feature: domain Description: COG4584 Location: 379-763 bp Feature: domain Description: COG4584 Location: 379 -763 bp Feature: gene Location: 1040-1186 bp Feature: gene Location: 2342-2737 bp Ori: EDT38412.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2543-2729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2543-2729 bp Feature: gene Location: 2825-4165 bp Ori: EDT38413.1 Feature: domain Description: DUF772 Location: 2828-2948 bp Feature: domain Description: DUF772 Location: 2828-29 48 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3647-4007 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3647-4007 bp Feature: gene Location: 4594-5796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII, DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)