myRT

myRT report for GCA_000183545.3_ASM18354v3

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Seq: JH976536.1 Thermaerobacter subterraneus DSM 13965 genomic scaffold ThesuDRAFT_TSB.1, whole genome shotgun sequence (390757 bp)
Overview 1 RT 1: 33653-38329 bp Neighborhood of RT #1 [33653, 38565] COG4585 CitB RVT-GII GIIM Flp TadE Feature: gene Location: 33653-34837 bp Feature: domain Description: COG4585 Location: 33773-34793 bp Feature: domain Description: COG4585 Location: 33773-34793 bp Feature: gene Location: 34812-35468 bp Feature: domain Description: CitB Location: 34821-35460 bp Feature: domain Description: CitB Location: 34821 -35460 bp Feature: gene Location: 36093-37355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36294-36912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36294-3691 2 bp Feature: domain Description: GIIM Note: maturase Location: 36963-37179 bp Feature: domain Description: GIIM Note: maturase Location: 36963-371 79 bp Feature: gene Location: 37701-37901 bp Feature: domain Description: Flp Location: 37746-37890 bp Feature: domain Description: Flp Location: 37746-37890 bp Feature: gene Location: 38107-38565 bp Feature: domain Description: TadE Location: 38203-38329 bp Feature: domain Description: TadE Location: 38203-38329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4585 (Signal transduction histidine kinase ), CitB (TIGR02484), RVT-GII, GIIM (pfam08388), Flp (COG3847), TadE (pfam07811)

Seq: JH976535.1 Thermaerobacter subterraneus DSM 13965 genomic scaffold ThesuDRAFT_TSB.2, whole genome shotgun sequence (2497984 bp)
Overview 1 RT 1: 310831-320908 bp 2 RT 2: 1047177-1054123 bp 3 RT 3: 1215899-1223564 bp 4 RT 4: 1234690-1241840 bp Neighborhood of RT #1 [310831, 321009] RsfS leuS RVT-GII GIIM ComEA ComEC_Rec2 ComEC_Rec2 ComEC_Rec2 ComEC_Rec2 Neighborhood of RT #2 [1047177, 1054128] PRK00052 SufI RVT-GII GIIM OmpR BaeS Neighborhood of RT #3 [1215899, 1223593] Fdhalpha-like MFS_OFA_like MFS_OFA_like RVT-GII GIIM PRK00701 HTH_ARSR Neighborhood of RT #4 [1234690, 1242082] Sco1 COG2847 RVT-GII GIIM DegQ TrpE TrpE Feature: gene Location: 310831-311187 bp Feature: domain Description: RsfS Location: 310846-311167 bp Feature: domain Description: RsfS Location: 310846-311167 bp Feature: gene Location: 311761-314367 bp Feature: domain Description: leuS Location: 311782-314362 bp Feature: domain Description: leuS Location: 311782 -314362 bp Feature: gene Location: 315215-316516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315416-316034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315416-316034 bp Feature: domain Description: GIIM Note: maturase Location: 316085-316301 bp Feature: domain Description: GIIM Note: maturase Location: 316085-316301 bp Feature: gene Location: 316814-317995 bp Feature: domain Description: ComEA Location: 317501-317984 bp Feature: domain Description: ComEA Location: 317501-317984 bp Feature: gene Location: 318031-321009 bp Feature: domain Description: ComEC_Rec2 Location: 318511-319204 bp Feature: domain Description: ComEC_Rec2 Location: 318511-3192 04 bp Feature: domain Description: ComEC_Rec2 Location: 319585-319744 bp Feature: domain Description: ComEC_Rec2 Location: 319585-319744 bp Feature: domain Description: ComEC_Rec2 Location: 320044-320383 bp Feature: domain Description: ComEC_Rec2 Location: 32 0044-32 0383 bp Feature: domain Description: ComEC_Rec2 Location: 320605-320908 bp Feature: domain Description: ComEC_Rec2 Location: 32 0605-32 0908 bp Feature: gene Location: 1047177-1047974 bp Feature: domain Description: PRK00052 Location: 1047354-1047657 bp Feature: domain Description: PRK00052 Location: 1047354-1047657 bp Feature: gene Location: 1048242-1049936 bp Feature: domain Description: SufI Location: 1048257-1049883 bp Feature: domain Description: SufI Location: 10482 57-1049883 bp Feature: gene Location: 1050547-1051848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1050748-1051366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1050748-1051366 bp Feature: domain Description: GIIM Note: maturase Location: 1051417-1051633 bp Feature: domain Description: GIIM Note: maturase Location: 1051417-1051633 bp Feature: gene Location: 1052039-1052746 bp Feature: domain Description: OmpR Location: 1052042-1052717 bp Feature: domain Description: OmpR Location: 1052 042 -1052 717 bp Feature: gene Location: 1052743-1054128 bp Feature: domain Description: BaeS Location: 1053115-1054123 bp Feature: domain Description: BaeS Location: 1053115-105412 3 bp Feature: gene Location: 1215899-1218271 bp Feature: domain Description: Fdhalpha-like Location: 1216025-1218203 bp Feature: domain Description: Fdhalpha-like Location: 12 1602 5-12 182 03 bp Feature: gene Location: 1218268-1219341 bp Feature: domain Description: MFS_OFA_like Location: 1218310-1218418 bp Feature: domain Description: MFS_OFA_like Location: 12 18310-12 18418 bp Feature: domain Description: MFS_OFA_like Location: 1219039-1219273 bp Feature: domain Description: MFS_OFA_like Location: 12 19039-12 192 73 bp Feature: gene Location: 1219998-1221260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1220199-1220817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 0199-12 2 0817 bp Feature: domain Description: GIIM Note: maturase Location: 1220868-1221084 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 0868-12 2 1084 bp Feature: gene Location: 1221625-1223076 bp Feature: domain Description: PRK00701 Location: 1221754-1223041 bp Feature: domain Description: PRK00701 Location: 12 2 1754-12 2 3041 bp Feature: gene Location: 1223225-1223593 bp Feature: domain Description: HTH_ARSR Location: 1223345-1223564 bp Feature: domain Description: HTH_ARSR Location: 12 2 3345-12 2 3564 bp Feature: gene Location: 1234690-1235385 bp Feature: domain Description: Sco1 Location: 1234846-1235368 bp Feature: domain Description: Sco1 Location: 12 34846-12 35368 bp Feature: gene Location: 1235402-1235902 bp Feature: domain Description: COG2847 Location: 1235528-1235897 bp Feature: domain Description: COG2 847 Location: 12 3552 8-12 35897 bp Feature: gene Location: 1236617-1237879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236818-1237436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 36818-12 37436 bp Feature: domain Description: GIIM Note: maturase Location: 1237487-1237703 bp Feature: domain Description: GIIM Note: maturase Location: 12 37487-12 37703 bp Feature: gene Location: 1238120-1239601 bp Feature: domain Description: DegQ Location: 1238516-1239578 bp Feature: domain Description: DegQ Location: 12 38516-12 39578 bp Feature: gene Location: 1240187-1242082 bp Feature: domain Description: TrpE Location: 1240217-1240943 bp Feature: domain Description: TrpE Location: 12 402 17-12 40943 bp Feature: domain Description: TrpE Location: 1241147-1241840 bp Feature: domain Description: TrpE Location: 12 41147-12 41840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsfS (pfam02410), leuS (PRK12300), RVT-GII, GIIM (pfam08388), ComEA (COG1555), ComEC_Rec2 (TIGR00361), PRK00052 (prolipoprotein diacylglyceryl transferase; Reviewed), SufI (COG2132), OmpR (COG0745), BaeS (COG0642)
Fdhalpha-like (TIGR01701), MFS_OFA_like (cd17353), PRK00701 (divalent metal cation transporter MntH), HTH_ARSR (smart00418), Sco1 (COG1999), COG2847 (Copper(I)-binding protein ), DegQ (pfam08181), TrpE (COG0147)